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Data from: Fully automated sequence alignment methods are comparable to, and much faster than, traditional methods in large data sets: an examp
- 负责人：
- 关键词：
- DOI：
- doi:10.5061/dryad.nc220
- 摘要：
- Aligning sequences for phylogenetic analysis (multiple sequence alignment; MSA) is an important, but increasingly computationally expensive step
Data from: PROTAX-fungi: a web-based tool for probabilistic taxonomic placement of fungal ITS sequences
- 负责人：
- DOI：
- doi:10.5061/dryad.9dr6j0c
- 摘要：
- ? Incompleteness of reference sequence databases and unresolved taxonomic relationships complicates taxonomic placement of fungal sequences
Data from: The effects of read length, quality and quantity on microsatellite discovery and primer development: from Illumina to PacBio
- 负责人：
- DOI：
- doi:10.5061/dryad.r20t0
- 摘要：
- luding single-molecule real-time DNA sequencing (Pacific Biosciences, or PacBio) remain viable alternatives. We outline a workflow from sequence quality cont
Data from: Extracting spatio-temporal patterns in animal trajectories: an ecological application of sequence analysis methods
- 负责人：
- 关键词：
- autocorrelation data exploration dendrograms distance habitat use Hamming roe deer spatio-temporal sequences
- DOI：
- doi:10.5061/dryad.h4f7p
- 摘要：
- of sequence analysis methods, derived from molecular biology, to explore and identify ecologically relevant sequential patterns in habitat use by animals. We appli
Data from: SATé-II: very fast and accurate simultaneous estimation of multiple sequence alignments and phylogenetic trees
- 负责人：
- DOI：
- doi:10.5061/dryad.n9r3h
- 摘要：
- , can analyze larger datasets, and runs more efficiently than SATé-I. SATé-II is a meta-method that takes an existing multiple sequence alignment method
Data from: Mammalian evolution: timing and implications from using the LogDeterminant transform for proteins of differing amino acid composition
- 负责人：
- DOI：
- doi:10.5061/dryad.389
- 摘要：
- condary calibration from the mammal/bird divergence, allows inferences of the times of divergence of putative clades. Allowing for sampling variances due to finite sequence
Data from: Reconstructing phylogeny from reduced-representation genome sequencing data without assembly or alignment
- 负责人：
- DOI：
- doi:10.5061/dryad.r0hq0
- 摘要：
- s with whole genomes and are especially practical for non-model organisms; nonetheless, alignment-free methods have not been applied with reduced genome sequencing
Data from: PrimerMiner: an R package for development and in silico validation of DNA metabarcoding primers
- 负责人：
- DOI：
- doi:10.5061/dryad.4c3g9
- 摘要：
- ng complete mitochondrial genomes alone. Furthermore, we visualized the generated OTU sequence alignments and describe how to evaluate primers in silico using PrimerMiner
Data from: Disentangling methodological and biological sources of gene tree discordance on Oryza (Poaceae) chromosome 3
- 负责人：
- DOI：
- doi:10.5061/dryad.6169b
- 摘要：
- e reasonable results when intron sequence was included during sequence alignment and/or tree inference, the alignment software PRANK was used, and/or detectable
Data from: Disentangling methodological and biological sources of gene tree discordance on Oryza (Poaceae) chromosome 3
- 负责人：
- DOI：
- doi:10.5061/dryad.6169b.1
- 摘要：
- e reasonable results when intron sequence was included during sequence alignment and/or tree inference, the alignment software PRANK was used, and/or detectable
