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Data from: Evolution and diversification of the organellar release factor family
- 负责人：
- DOI：
- doi:10.5061/dryad.2br48
- 摘要：
- and its stop codon usage tend to co-evolve, we find three taxa that encode an RF2 without using UGA stop codons, and one reverse scenario, where mamiellales
Data from: A partitioned likelihood analysis of swallowtail butterfly phylogeny (Lepidoptera: Papilionidae)
- 负责人：
- DOI：
- doi:10.5061/dryad.615
- 摘要：
- several partitioned and unpartitioned likelihood models. Partitioned models gave significantly better fits to the data than did unpartitioned models
Data from: GHOST: Recovering Historical Signal from Heterotachously-evolved Sequence Alignments
- 负责人：
- DOI：
- doi:10.5061/dryad.t389h81
- 摘要：
- convergent evolution of the electric organ in two geographically distinct lineages of electric fish. We compare inference under the GHOST model to partitioning by codon
Data from: Evidence for complex selection on four-fold degenerate sites in Drosophila melanogaster
- 负责人：
- DOI：
- doi:10.5061/dryad.1pd2j
- 摘要：
- e, the traditional biallelic model to describe the evolution of four-fold degenerate sites should be replaced by more complex models assuming only quasi-equilibrium
Data from: SimPhy: phylogenomic simulation of gene, locus and species trees
- 负责人：
- DOI：
- doi:10.5061/dryad.707td
- 摘要：
- -specific, locus-specific), that can be fixed or be sampled from a priori statistical distributions. SimPhy also incorporates comprehensive models
Data from: Clade-specific positive selection on a developmental gene: branchless trichome and the evolution of stellate trichomes in Physaria (Brassicaceae)
- 负责人：
- DOI：
- doi:10.5061/dryad.3ms19
- 摘要：
- branching pattern. Maximum likelihood models of codon evolution point to a shift in selective pressure affecting the evolution of BLT across the entire Physaria clade
Data from: Phylogenetic patterns of codon evolution in the actin-depolymerizing factor/cofilin (adf/cfl) gene family
- 负责人：
- DOI：
- doi:10.5061/dryad.4vb0j
- 摘要：
- gene family. Estimating the rate of non-synonymous to synonymous mutations (dN/dS) across phylogenetic lineages revealed that the majority of ADF/CFL codon positions wer
Data from: A case-by-case analysis of four imprinted retrogenes
- 负责人：
- 关键词：
- gene expression;Evolutionary genomics;imprinting;molecular evolution;Retrogene;protein structure
- DOI：
- doi:10.5061/dryad.8096
- 摘要：
- -based models of sequence evolution, we show these retrogenes have diverse evolutionary trajectories, including divergence from the parent cod
Data from: Phylogenomic analyses support the position of turtles as the sister group of birds and crocodiles (Archosauria)
- 负责人：
- DOI：
- doi:10.5061/dryad.87b01fq0
- 摘要：
- of the nucleotide and amino acid substitution processes unambiguously support turtles as a sister group to birds and crocodiles. The use of more simplistic models
Data from: Homoplasy-based partitioning outperforms alternatives in Bayesian analysis of discrete morphological data
- 负责人：
- DOI：
- doi:10.5061/dryad.1hh515h
- 摘要：
- phylogenetic inference using relaxed morphological clocks and tip dating whenever fossils are available. As with molecular data, recent studies have shown that modeling
