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Data from: Analysis of spounaviruses as a case study for the overdue reclassification of tailed phages
- 负责人：
- DOI：
- doi:10.5061/dryad.106q6g6
- 摘要：
- . In this study, we used a wide range of complementary methods – including comparative genomics, core genome analysis, and marker gene phylogenetics – to show tha
Data from: Electrophoretic mobility confirms reassortment bias among geographic isolates of segmented RNA phages
- 负责人：
- DOI：
- doi:10.5061/dryad.6qh25
- 摘要：
- kely to provide insight into important viral evolutionary dynamics including the rate of coinfection, virulence and host range shifts. Electrophoretic
Data from: New approaches for unravelling reassortment pathways
- 负责人：
- 关键词：
- DOI：
- doi:10.5061/dryad.mg040
- 摘要：
- . Phylogenetic methods have been used traditionally to identify reassortant viruses. In many studies up to now, the assumption has been that if two phylogenetic trees dif
Data from: Inference of Japanese encephalitis virus ecological and evolutionary dynamics from passive and active virus surveillance
- 负责人：
- DOI：
- doi:10.5061/dryad.11c40
- 摘要：
- cterized whether passive surveillance alone can capture the circulating genetic diversity to make reasonable inferences. Here, we develop phylogenetic
Data from: Exploring an alternative explanation for the second phase of viral decay: infection of short-lived cells in a drug-limited compartment
- 负责人：
- DOI：
- doi:10.5061/dryad.6980c06
- 摘要：
- . In the current study, the latter hypothesis was investigated using a model of viral kinetics. Empirical datasets were involved in model elaboration and parameter estimati
Data from: Population genetics of fruit bat reservoir informs the dynamics, distribution, and diversity of Nipah virus
- 负责人：
- DOI：
- doi:10.5061/dryad.2dc364n
- 摘要：
- history, and phylogeography of P. medius in Bangladesh. We combine this with a phylogeographic analysis of all known Nipah virus sequences and strains currently availab
Data from: Markov-modulated continuous-time Markov chains to identify site- and branch-specific evolutionary variation in BEAST
- 负责人：
- DOI：
- doi:10.5061/dryad.230s5h0
- 摘要：
- l substitution rate) at individual sites to vary across lineages. We implement a general MMM framework in BEAST, a popular Bayesian phylogenetic
Data from: Gene flow and pathogen transmission among bobcats (Lynx rufus) in a fragmented urban landscape
- 负责人：
- Lee, Justin S.
- DOI：
- doi:10.5061/dryad.mm317th7
- 摘要：
- y be particularly sensitive to habitat fragmentation. We performed genetic analyses on bobcats and their directly transmitted viral pathoge
Data from: Macroecology of birds potentially susceptible to the West Nile Virus
- 负责人：
- Tolsá, María
- DOI：
- doi:10.5061/dryad.qr971vj
- 摘要：
- competent reservoirs. Furthermore, results indicated that the variability of these metrics was attributable to phylogenetic, time-space, and sample size
Data from: Linking social and spatial networks to viral community phylogenetics reveals subtype-specific transmission dynamics in African lions
- 负责人：
- Fountain-Jones, Nicholas M.
- 关键词：
- feline immunodeficiency virus generalized dissimilarity modelling landscape ecology OTU networks transmission mode wildlife disease community ecology
- DOI：
- doi:10.5061/dryad.8j3s3
- 摘要：
- transmission routes is challenging. 2.Here we apply both phylodynamic and phylogenetic community ecology techniques to examine the consequences of pathoge
