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Data from: Global patterns in coronavirus diversity
负责人:
关键词:
bats;viral ecology;coronavirus;viral diversity
DOI:
doi:10.5061/dryad.34db1gr
摘要:
diversity at a global scale. We identified sequences representing 100 discrete phylogenetic clusters, ninety-one of which were found in bats, and used ecological
Data from: Evidence that hepatitis C virus genome partly controls infection outcome
负责人:
关键词:
Biomedicine;Phylogenetic Theory and Methods;Host Parasite Interactions;Evolutionary Medicine;Bioinfomatics\/Phyloinfomatics;Flaviviridae;Disease Biology;Hepacivirus
DOI:
doi:10.5061/dryad.3978f
摘要:
phylogenetic approaches previously developed to estimate the virus control over set-point viral load in HIV-1 infections, we simulate inheritance of a binary
Data from: Occurrence and phylogenetic analysis of bovine respiratory syncytial virus in outbreaks of respiratory disease in Norway
负责人:
关键词:
Phylogeny Deduced amino acids Nucleotide sequences Bovine respiratory syncytial virus G protein
DOI:
doi:10.5061/dryad.6k8b1
摘要:
gate the etiological role of BRSV and other respiratory viruses in epidemics of BRD and to perform phylogenetic analysis of Norwegian BRSV strains. Results: BRSV infecti
Data from: A non-parametric analytic framework for within-host viral phylogenies and a test for HIV-1 founder multiplicity
负责人:
关键词:
phylogenetics;HIV-1;methodology;laplacian;vaccine;HIV-1 founder multiplicity
DOI:
doi:10.5061/dryad.33m05qb
摘要:
Phylogenetics is a powerful tool for understanding the diversification dynamics of viral pathogens. Here we present an extension
Data from: Inferring HIV-1 transmission networks and sources of epidemic spread in Africa with deep-sequence phylogenetic analysis
负责人:
关键词:
Transmission networks;HIV;Infectious disease epidemiology;2011-2015;phylogenetics;Deep-sequence phylogenetics;HIV prevention;Phylodynamics
DOI:
doi:10.5061/dryad.7h46hg2
摘要:
works, and infer the direction of transmission within them at an estimated error rate of 16.3% [8.8–28.3%]. With this error rate, deep-sequence phylogenetics cann
Data from: Zika virus in the Americas: early epidemiological and genetic findings
负责人:
关键词:
Epidemiology;phylogenetics;Zika virus
DOI:
doi:10.5061/dryad.6kn23
摘要:
y and congenital malformations. Phylogenetic and molecular clock analyses show a single introduction of ZIKV into the Americas, estimated to have occurred between May-Dec 2013
Data from: A synchronized global sweep of the internal genes of modern avian influenza virus
负责人:
关键词:
influenza A virus;phylogenetics;Host-specific local clock
DOI:
doi:10.5061/dryad.m04j9
摘要:
nce of RNA viruses such as influenza?A virus (IAV) are still incompletely understood. Phylogenetic inference is crucial to reconstructing the origins and tra
Data from: A relaxed directional random walk model for phylogenetic trait evolution
负责人:
关键词:
Diffusion Processes;phylogeography;phylogenetics;Phylodynamics;Brownian motion;trait evolution
DOI:
doi:10.5061/dryad.v43rd
摘要:
mming approach to compute the data likelihood enables scaling of our method to large data sets frequently encountered in phylogenetic comparative studies and viral evolution
Data from: Phylodynamic model adequacy using posterior predictive simulations
负责人:
关键词:
Bayesian phylogenetics;Viral evolution;posterior predictive simulation;BEAST2;Phylodynamics;model adequacy
DOI:
doi:10.5061/dryad.65p331m
摘要:
BEAST2 software, that allows assessing the adequacy of phylodynamic models. We illustrate its utility by analysing phylogenetic trees from two viral
Data from: Ecosystem interactions underlie the spread of avian influenza A viruses with pandemic potential
负责人:
Justin Bahl
关键词:
H9 H3 and H6 Subtype Virus Phylogeography Epidemiology Poultry Trade Wild Birds Statistical phylogenetics Bayesian inference
DOI:
doi:10.5061/dryad.601fd
摘要:
ecosystems. In general, viral flow from domestic to wild bird populations was restricted to within a geographic region. In contrast, spillover from wild

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