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Data from: Validity of the Diplostomoidea and Diplostomida (Digenea, Platyhelminthes) upheld in phylogenomic analysis
负责人:
关键词:
metacercaria;Diplostomoidea;Platyhelminthes;Strigeida;Hysteromorpha;Diplostomida;Cotylurus;Holocene;Nuclear-mitochondrial discordance;Alaria;phylogenomics
DOI:
doi:10.5061/dryad.7kj7t1q
摘要:
topology, we also analyzed hundreds of ultra-conserved elements (UCEs) assembled from shotgun sequencing. The Diplostomida was paraphyletic in the mt genome
Data from: Phylogenomics, biogeography and diversification of obligate mealybug-tending ants in the genus Acropyga
负责人:
关键词:
Formicidae;ultraconserved elements;UCEs;herding;Acropyga;Insect systematics;mutualism
DOI:
doi:10.5061/dryad.f4857
摘要:
rated a data set of 944 loci of ultraconserved elements (UCEs) to reconstruct the phylogeny of 41 representatives of 23 Acropyga species using both concatenation
Data from: High phylogenetic utility of an ultraconserved element probe set designed for Arachnida
负责人:
Derkarabetian, Shahan
关键词:
phylogenomics population genomics target enrichment ultraconserved elements arthropods
DOI:
doi:10.5061/dryad.5k3j3
摘要:
, have hindered progress. Here, we present a genomic toolkit for arachnids featuring hundreds of conserved DNA regions (ultraconserved elements or UCEs
Data from: A phylogenomic perspective on the biogeography of skinks in the Plestiodon brevirostris group inferred from target enrichment
负责人:
关键词:
Plestiodon;ancestral area;Miocene;Pliocene;phylogenomics;phylogeography;Pleistocene
DOI:
doi:10.5061/dryad.21j0n
摘要:
reconstructions impacted by the use of different phylogenetic trees? Location: Mexico. Methods: We used target enrichment of ultraconserved elements (UCEs
Data from: Phylogenomic incongruence, hypothesis testing, and taxonomic sampling: the monophyly of characiform fishes
负责人:
关键词:
Concatenation;Exons;Otophysi;Multispecies coalescent methods;UCEs;Gene genealogy interrogation
DOI:
doi:10.5061/dryad.vb76b45
摘要:
) and data curation to new and published datasets with more than 1000 exons, 500 ultraconserved element (UCE) loci, and transcriptomic sequences that support
Data from: Conflicting evolutionary histories of the mitochondrial and nuclear genomes in New World Myotis bats
负责人:
关键词:
incomplete lineage sorting;Concatenation;summary tree methods;UCE;ultraconserved elements;Reticulation;Vespertilionidae;phylogenomics
DOI:
doi:10.5061/dryad.5g205
摘要:
of 3,648 ultraconserved elements (UCEs). We inferred the phylogeny and explored the effects of concatenation and summary phylogenetic methods
Data from: Target enrichment of ultraconserved elements from arthropods provides a genomic perspective on relationships among Hymenoptera
负责人:
关键词:
UCEs ultraconserved elements target enrichment baits probes arthropods conserved sequence
DOI:
doi:10.5061/dryad.46195
摘要:
in and can be collected from insect genomes. Here, we identify a large set (n = 1510) of ultraconserved elements (UCEs) shared among the insect order Hymenoptera. We use
Data from: Sequence capture of ultraconserved elements from bird museum specimens
负责人:
关键词:
systematics;Aphelocoma woodhouseii;phylogeography;Birds;Bioinfomatics\/Phyloinfomatics;Aphelocoma sumichrasti;Aphelocoma californica;Gallus gallus
DOI:
doi:10.5061/dryad.qh8sh
摘要:
museum specimens. Here, we use one type of NGS approach, sequence capture of ultraconserved elements (UCEs), to collect data from bird museum specimens as old as 120
Data from: Willet be one species or two?: a genomic view of the evolutionary history of Tringa semipalmata
负责人:
关键词:
Tringa;Tringa semipalmata inornata;Z chromosome;Tringa semipalmata;shorebirds;drift;species delimitation;Tringa semipalmata semipalmata;ultraconserved elements;sexual selection;mito-nuclear discordance
DOI:
doi:10.5061/dryad.2361d
摘要:
from the ND2 locus, and nuclear DNA sequences from genomic libraries enriched for ultraconserved elements (UCEs). Mitochondrial haplotypes wer
Data from: The evolution of peafowl and other taxa with ocelli (eyespots): a phylogenomic approach
负责人:
关键词:
homology;Argusianus;sexual selection;Polyplectron;eyespots;Afropavo;UCE's;Rheinardia;Pavo;ocelli;Haematortyx;Phasianidae;Galloperdix
DOI:
doi:10.5061/dryad.66942
摘要:
ultraconserved elements (UCEs) and three mitochondrial regions. The three ocellated genera did form a strongly supported clade, but each ocellated genus was sister

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