Data from: On the optimal trimming of high-throughput mRNA sequence data

负责人：

关键词：

Trinity;genomics;RNAseq

DOI：

doi:10.5061/dryad.7rm34

摘要：

The widespread and rapid adoption of high-throughput sequencing technologies has afforded researchers the opportunity to gain a deep understanding

Data from: Gene expression differs in codominant prairie grasses under drought

负责人：

关键词：

Andropogon gerardii;RNA-seq;Sorghastrum nutans;C4 grass;dominant species;tallgrass prairie;comparative expression

DOI：

doi:10.5061/dryad.5bk4c

摘要：

C4 grasses responsible for the majority of ecosystem function, using RNA-seq. We compared Trinity assemblies within each species to determine annotated

Data from: Genomics of Compositae crops: reference transcriptome assemblies, and evidence of hybridization with wild relatives

负责人：

关键词：

Agriculture Transcriptomics Angiosperms Hybridization

DOI：

doi:10.5061/dryad.cp723

摘要：

reads were assembled using Trinity, and 454 reads were assembled using MIRA and CAP3. We evaluated the coverage of the transcriptomes using BLASTX

Data from: Challenges and strategies in transcriptome assembly and differential gene expression quantification. A comprehensive in silico assessment of RNA-seq experiments.

负责人：

关键词：

Genomics\/Proteomics;Transcriptomics;molecular evolution;Bioinfomatics\/Phyloinfomatics;Ecological Genetics;Gene Structure and Function

DOI：

doi:10.5061/dryad.3t3n7

摘要：

-Abyss, Trinity, SOAPdenovo-Trans). Transcriptome complexity (size, paralogs, alternative splicing isoforms) negatively affected the assembly and DE

The Genome Of The Tardigrade Hypsibius Dujardini

负责人：

关键词：

tardigrade blobtools contamination metagenomics horizontal gene transfer hypsibius dujardini

DOI：

doi:10.5281/zenodo.45162

摘要：

of each base by PolyA-selected RNAseq readsH dujardini transcriptome data
==============================1. Trinity.fasta.c99.gz - Preliminary