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Data from: PrimerMiner: an R package for development and in silico validation of DNA metabarcoding primers
负责人:
关键词:
Metabarcoding;Molecular Biology;data mining;primer;PCR
DOI:
doi:10.5061/dryad.4c3g9
摘要:
ng complete mitochondrial genomes alone. Furthermore, we visualized the generated OTU sequence alignments and describe how to evaluate primers in silico using PrimerMiner
Data from: Seasonal diversity and dynamics of haptophytes in the Skagerrak, Norway, explored by high-throughput sequencing
负责人:
关键词:
Environmental DNA;metagenomics;Protists;Microbial Biology;Pavlovophyceae;Prymnesiophyceae;haptophytes;Bioinfomatics\/Phyloinfomatics;Haptophyta;population dynamics
DOI:
doi:10.5061/dryad.b8d21
摘要:
and/or not yet 18S rDNA-sequenced species. Haptophyte OTU richness and community composition exhibited high temporal variation and significant yearly periodicity. Richness
Data from: The rpb2 gene represents a viable alternative molecular marker for the analysis of environmental fungal communities
负责人:
关键词:
Fungi;DNA Barcoding;metagenomics;Community Ecology
DOI:
doi:10.5061/dryad.vj3p9
摘要:
. The proportions of OTU counts and read counts of major fungal groups were close to the reality when rpb2 was used as a molecular marker while they were strongl
Data from: Changes in the bacterial microbiota in gut, blood, and lungs following acute LPS instillation into mice lungs
负责人:
关键词:
lungs;LPS;microbiome
DOI:
doi:10.5061/dryad.7874p
摘要:
the total bacteria in blood but not in the cecum. The increase in total bacteria in the blood correlated with Phyllobacteriaceae OTU 40 and was significantly reduced
Data from: High gut microbiota diversity provides lower resistance against infection by an intestinal parasite in bumblebees
负责人:
关键词:
Ecology: community;Crithidia bombi;Evolution: host\/parasite;Bombus terrestris;Ecology: experimental;Ecology: microbial
DOI:
doi:10.5061/dryad.4nm5sh4
摘要:
can be informative of the eventual infection outcome. Specifically, higher microbiota OTU diversity and evenness are associated with less resistance. Howeve
Data from: Geographic location and food availability offer differing levels of influence on the bacterial communities associated with larval sea urchins
负责人:
关键词:
Ecology;host-microbe;Strongylocentrotus droebachiensis;symbiosis;2015-2017;Plasticity;echinopluteus;microbiome
DOI:
doi:10.5061/dryad.v41mp7m
摘要:
within each S. droebachiensis larval population based on food availability, development, phenotype, and time, variation in OTU membership
Data from: Long-term experimental warming alters community composition of ascomycetes in Alaskan moist and dry arctic tundra
负责人:
关键词:
Ascomycota;Metabarcoding;ITS;ITEX;arctic fungi;climate change
DOI:
doi:10.5061/dryad.2fc32
摘要:
we quantified how OTU assemblage and richness of different orders of Ascomycota changed in response to summer warming. Experimental warming significantly altered
Data from: Amplicon-pyrosequencing based detection of compositional shifts in bryophyte-associated fungal communities along an elevation gradient.
负责人:
关键词:
Polytrichum formosum;Fungal diversity;Dicranum scoparium;Hylocomium splendens;Pleurozium schreberi;fungal biomass
DOI:
doi:10.5061/dryad.c2hf0
摘要:
associated with four bryophyte species changed across an elevational gradient transitioning from conifer forest to the low alpine. Fungal biomass and OTU richness
Data from: Organic farming increases richness of fungal taxa in the wheat phyllosphere
负责人:
Karlsson, Ida
关键词:
microbiome microbiota biodiversity farming systems high-throughput sequencing
DOI:
doi:10.5061/dryad.01f10
摘要:
for fungal community composition and OTU richness. These findings help provide a more comprehensive understanding of the effect of organic farming on the diversity
Data from: Host species, pathogens, and disease associated with divergent nasal microbial communities in tortoises
负责人:
关键词:
Gopherus berlandieri;tortoise;bacteria;Gopherus;upper respiratory tract disease;Gopherus morafkai;pyrosequencing;Gopherus polyphemus;Gopherus agassizii;microbiome
DOI:
doi:10.5061/dryad.7f2v776
摘要:
, we investigated the prevalence and operational taxonomic unit (OTU) diversity of the potential pathogen Pasteurella testudinis, and found it to be common, abundant

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