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Data from: A protocol for targeted enrichment of intron-containing sequence markers for recent radiations: a phylogenomic example from Heuchera
负责人:
关键词:
Heuchera;intron enrichment;Saxifragaceae;targeted enrichment;COS marker
DOI:
doi:10.5061/dryad.4cn66
摘要:
and mitochondrial genomes were used as references for off-target reads. The data were aligned and subjected to coalescent and concatenated phylogenetic analyses
Data from: SimPhy: phylogenomic simulation of gene, locus and species trees
负责人:
关键词:
Multilocus Coalescent;Species tree;gene family evolution;Multispecies coalescent;incomplete lineage sorting;Simulation;substitution rate;Gene duplication and loss;gene conversion;Locus tree;Horizontal gene transfer
DOI:
doi:10.5061/dryad.707td
摘要:
ng, gene duplication and loss, horizontal gene transfer—all three potentially leading to species tree/gene tree discordance—and gene conversion. SimPhy implement
and the global challenge of protecting peripheral oceanic island endemic vertebrates
负责人:
关键词:
species delimitation;Gekko mindorensis;Faunal transplant;mitochondrial introgression;Gekko;single island endemics;conservation genetics;Gekko kikuchii
DOI:
doi:10.5061/dryad.mj3v6
摘要:
ian phylogenetic methods and coalescent-based species delimitation analyses to estimate phylogeographic relationships, construct multilocus haplotype networks and tes
Data from: Cryptic genetic diversity is paramount in small-bodied amphibians of the genus Euparkerella (Anura: Craugastoridae) endemic
负责人:
关键词:
Multilocus Species Tree;Euparkerella cochranae;Terrarana;Neotropical;Euparkerella tridactyla;Euparkerella brasiliensis;Amphibia;phylogeny;Miocene;Pliocene;Euparkerella robusta;Pleistocene
DOI:
doi:10.5061/dryad.690jk
摘要:
ng DNA sequence data from one mitochondrial and four nuclear genes coupled with traditional Bayesian phylogenetic reconstruction approaches and more recent coalescent
Data from: From the mountains to the coast and back again: ancient biogeography in a radiation of short-range endemic harvestmen from California
负责人:
关键词:
BioGeoBEARS;Multispecies coalescent;short-range endemism;Opiliones;Phalangodidae;Eocene;vicariance;Pliocene;Oligocene;historical biogeography;Calicina;Miocene;Laniatores
DOI:
doi:10.5061/dryad.70h1h
摘要:
ibrated species tree for 21 of 25 described Calicina species using multiple genes and multilocus coalescent-based methods. This species tree was used as a framework
Data from: Understanding the mechanisms of anti-tropical divergence in the seabird White-faced Storm-petrel (Procellariiformes: Pelagodroma marina
负责人:
关键词:
gene flow;Procellariiformes;Pelagodroma marina;anti-tropical divergence;anonymous nuclear markers;speciation;Pleistocene
DOI:
doi:10.5061/dryad.6nt0d
摘要:
Analytical methods that apply coalescent theory to multilocus data have improved inferences of demographic parameters that are critical
Data from: Mechanisms of global diversification in the brown booby (Sula leucogaster) revealed by uniting statistical phylogeographic and multilocus
负责人:
关键词:
Phylogenetic Theory and Methods;phylogeography;Sula leucogaster;Birds;Population Genetics - Empirical
DOI:
doi:10.5061/dryad.t49d5
摘要:
Recent theoretical and empirical research suggests that statistical models based on coalescent theory can improve both phylogeographic
Data from: Influence of gene flow on divergence dating – implications for speciation history of Takydromus grass lizards
负责人:
关键词:
gene flow;Reptiles;population demography;parapatric speciation;Takydromus spp.
DOI:
doi:10.5061/dryad.4p7n5
摘要:
mitochondrial locus published in GenBank. They were analyzed by a multispecies coalescent approach within a Bayesian framework. Divergence dating based
Data from: Multilocus coalescence analyses support a mtDNA-based phylogeographic history for a widespread Palearctic passerine bird, Sitta europaea
负责人:
关键词:
Coalescent Theory;phylogeography;Selection - Natural;Pleistocene;Sitta europaea
DOI:
doi:10.5061/dryad.nf91079h
摘要:
overing phylogeographic patterns. The use of multiple nuclear loci facilitated detection of an introgressed individual and improved estimates of process parameters suc

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