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Data from: Heterogeneity in genetic diversity among non-coding loci fails to fit neutral coalescent models of population history
负责人:
关键词:
multilocus;introns;Anas strepera;Neutrality;Holarctic;coalescent;simulations
DOI:
doi:10.5061/dryad.nv5v1v59
摘要:
Inferring aspects of the population histories of species using coalescent analyses of non-coding nuclear DNA has grown in popularity. Thes
Data from: Comparison of methods for molecular species delimitation across a range of speciation scenarios
负责人:
关键词:
molecular species delimitation;Multispecies coalescent;Bayesian phylogenetics;Simulation;generalized mixed Yule-coalescent;Poisson tree processes;speciation
DOI:
doi:10.5061/dryad.739bs
摘要:
e designed for the analysis of single-locus data but are often applied to concatenations of multilocus data. In contrast, the Bayesian multispecies coalescent approa
Data from: Species level phylogeny and polyploid relationships in Hordeum (Poaceae) inferred by next-generation sequencing and in-silico cloning
负责人:
关键词:
Multispecies coalescent;nuclear single-copy genes;in-silico cloning;polyploidy;Hordeum;phylogeny;Evolution;systematics
DOI:
doi:10.5061/dryad.fn2nt
摘要:
i separately and for a concatenated data matrix of all loci. For diploid taxa, a Bayesian concordance analysis and a coalescent-based dated species
Data from: Evaluating multilocus Bayesian species delimitation for discovery of cryptic mycorrhizal diversity
负责人:
关键词:
Caladenia;species delimitation;Serendipita vermifera;Bayesian;phylogeny;Serendipita;mycorrhizae;Holocene;Sebacina;coalescent;orchid mycorrhizal fungi
DOI:
doi:10.5061/dryad.2hf40
摘要:
lity of modern multilocus Bayesian coalescent-based methods for delimiting cryptic fungal diversity in the orchid mycorrhiza morphospecies Serendipita vermifera
Data from: The multispecies coalescent model outperforms concatenation across diverse phylogenomic
负责人:
关键词:
Bayesian model validation;coalescent prior;congruent gene trees;independent prior;Bayes factor;Athens;posterior predictive simulation;Metazoa
DOI:
doi:10.5061/dryad.7q6q3s0
摘要:
on, and multispecies coalescent (MSC) models across 47 phylogenomic data sets collected across tree of life. Tests for substitution models and the concatenation assumpti
Data from: Coestimating reticulate phylogenies and gene trees from multilocus sequence data
负责人:
Nakhleh, Luay
关键词:
Multispecies network coalescent reticulation incomplete lineage sorting phylogenetic network Bayesian inference RJMCMC
DOI:
doi:10.5061/dryad.3h185
摘要:
The multispecies network coalescent (MSNC) is a stochastic process that captures how gene trees grow within the branches of a phylogeneti
Data from: Calibrating divergence times on species trees versus gene trees: implications for speciation history of Aphelocoma jays
负责人:
关键词:
phylogeography;phylogenetics;Biogeography;Aphelocoma ultramarina;Miocene;Pliocene;speciation;Pleistocene
DOI:
doi:10.5061/dryad.1786
摘要:
nt innovations for dating speciation events with the analytical power of species trees, where multilocus data are considered in a coalescent cont
Data from: A rapid and scalable method for multilocus species delimitation using Bayesian model comparison and rooted triplets
负责人:
关键词:
Bayesian model comparison;Bacterial species;Bacillus;Multilocus species delimitation;Dynamic programming;present
DOI:
doi:10.5061/dryad.3cb25
摘要:
. However, current statistical methods based on a multispecies coalescent framework are computationally demanding, because of the number of poss
Data from: Coalescent-based species delimitation approach uncovers high cryptic diversity in the cosmopolitan lichen-forming fungal genus
负责人:
关键词:
Protoparmelia;BPP;coalescent-based models;Multilocus phylogeny;species delimitation;cryptic species
DOI:
doi:10.5061/dryad.0q515
摘要:
ng two coalescent-based species delimitation methods – BP&P and spedeSTEM. Our results suggest the presence of a tropical and an extra-tropical lineage, and eleven pr

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