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Data from: Diversity, disparity, and evolutionary rate estimation for unresolved Yule trees
负责人:
关键词:
Brownian motion;comparative method;pure-birth process;Yule process;trait disparity;phylogenetic diversity;Markov reward process;quantitative trait evolution
DOI:
doi:10.5061/dryad.2cb46
摘要:
in comparative evolutionary studies by assuming that the tree arises from a continuous-time Markov branching model called the Yule process. To do this, we derive
Data from: MatlabHTK: a simple interface for bioacoustic analyses using Hidden Markov models
负责人:
关键词:
DOI:
doi:10.5061/dryad.6kv00
摘要:
m speech processing frameworks, such as hidden Markov models, have been successful in analysing bioacoustic data but the software implementations can be expensive
Data from: Bridging inter- and intraspecific trait evolution with a hierarchical Bayesian approach
负责人:
关键词:
intraspecific variance;comparative phylogenetics;Macroevolution;Markov chain Monte Carlo;JIVE;hierarchical Bayesian model;niche breadth
DOI:
doi:10.5061/dryad.n4vp0
摘要:
and abiotic environments underlie many processes, such as intraspecific competition, resource partitioning and, eventually, species formation. Nevertheless, compar
Data from: A Bayesian approach for detecting the impact of mass-extinction events on molecular phylogenies when rates of lineage diversification ma
负责人:
关键词:
Compound Poisson Process Model;Birth-Death Stochastic-Branching Process;Bayesian inference;Lineage Diversification Rates;phylogeny;28 Mass Extinction;speciation
DOI:
doi:10.5061/dryad.v16ns
摘要:
mass-extinction events. Each type of event is modelled as an independent compound Poisson process (CPP), where the waiting times between events ar
Data from: Collective dispersal leads to variance in fitness and maintains offspring size variation within marine populations
负责人:
关键词:
genetic drift;bet hedging;Reproduction: strategies;Stochastic environments;Theory;Dispersal;Adaptation;Fitness;Selection: natural
DOI:
doi:10.5061/dryad.q5p8q
摘要:
offshore in groups, producing variance in fitness. Using a Markov process to calculate fixation probabilities for competing phenotypes, we examine
Data from: Phylogenetic tree estimation with and without alignment: new distance methods and benchmarking
负责人:
关键词:
Pair hidden Markov models;phylogenetic inference;Alignment free;Distance-based phylogenetics;statistical alignment
DOI:
doi:10.5061/dryad.n5r49
摘要:
estimates based on the two-step process tend to be substantially less accurate. This improved performance carries through to tree inference, where PaHMM-Tree
Data from: Disentangling the formation of contrasting tree-line physiognomies combining model selection and Bayesian par
负责人:
关键词:
Plant;Demography;Ecology: population;Ecology: spatial;Dispersal;Pinus uncinata;Modeling: individual based;Temperate Forest;Methods: computer simulations
DOI:
doi:10.5061/dryad.8422
摘要:
l subset of processes required for tree-line formation. A Bayesian approach combined with Markov chain Monte Carlo methods was employed to obta
Data from: A simulation-based approach to statistical alignment
负责人:
关键词:
statistical alignment;pairwise alignment;long-indel model;SimBa-SAl;sequence simulations
DOI:
doi:10.5061/dryad.p069231
摘要:
-based approach to statistical alignment inference, which relies on an explicit continuous Markov process for both indels and substitutions. SimBa-SAl ha
Data from: Bayesian analysis of biogeography when the number of areas is large
负责人:
关键词:
Bayesian biogeographic inference;Vireya;data augmentation;Markov chain Monte Carlo;historical biogeography;ancestral area analysis;Cenozoic;Rhododendron
DOI:
doi:10.5061/dryad.8346r
摘要:
of species range as a continuous-time Markov process of dispersal between and extinction within a set of discrete geographic areas. The main constraint of thes
Data from: Full Bayesian comparative phylogeography from genomic data
负责人:
关键词:
Bayesian model choice;Neogene;Gekko crombota;Gekko mindorensis;Biogeography;Quaternary;Gekko rossi;Dirichlet-process prior;phylogeography
DOI:
doi:10.5061/dryad.4b3j2bj
摘要:
to co-speciate. Such processes predict non-independent, temporally clustered divergences across taxa. Approximate-likelihood Bayesian computation (ABC

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