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Data from: Markov-modulated continuous-time Markov chains to identify site- and branch-specific evolutionary variation in BEAST
负责人:
关键词:
Markov-modulated models;heterotachy;BEAGLE;phylogenetics;Bayesian inference;covarion;BEAST
DOI:
doi:10.5061/dryad.230s5h0
摘要:
ins frequently overlooked. This is problematic, as evolutionary processes that act at the molecular level are highly variable, subjecting different sites to diffe
Data from: Reliability modelling and analysis of a multi-state element based on a dynamic Bayesian network
负责人:
关键词:
condition-based maintenance;conditional probability table;Markov process;Multi-state element;dynamic Bayesian network;dynamic fault tree
DOI:
doi:10.5061/dryad.1ch71sd
摘要:
of the Markov process and a dynamic Bayesian network (DBN), taking perfect repair, imperfect repair and condition-based maintenance (CBM) into consideration
Data from: Inferring heterogeneous evolutionary processes through time: from sequence substitution to phylogeography
负责人:
关键词:
phylogeography;phylogenetics;Epoch Model;BEAGLE;Bayesian inference;BEAST
DOI:
doi:10.5061/dryad.qp747
摘要:
use of graphics processing units. Through synthetic examples, we assess model performance in recovering evolutionary parameters from data generated acc
Data from: A new hierarchy of phylogenetic models consistent with heterogeneous substitution rates
负责人:
关键词:
ModelTest;Lie Markov models;model selection;phylogenetics;multiplicative closure
DOI:
doi:10.5061/dryad.461g6
摘要:
When the process underlying DNA substitutions varies across evolutionary history, some standard Markov models underlying phylogenetic methods ar
Data from: Consistency of VDJ rearrangement and substitution parameters enables accurate B cell receptor sequence annotation
负责人:
关键词:
B cell maturation;antibody;immunoglobulin;hidden Markov model
DOI:
doi:10.5061/dryad.149m8
摘要:
ametric distributions to model transitions from state to state in a hidden Markov model (HMM) of VDJ recombination, and assumed that mutations occur via the same process
Data from: Markov-modulated Poisson processes as a new framework for analyzing capture-recapture data
负责人:
关键词:
Capra ibex;spring 2011;Breeding
DOI:
doi:10.5061/dryad.098c4
摘要:
how an approach based on a Markov-modulated Poisson process (MMPP) (Freed & Shepp, 1982) allows, in a similar way to a multistate model, to model opportunistic data
Data from: Exact Bayesian inference for animal movement in continuous time
负责人:
关键词:
Bayesian statistics GPS data Markov chain Monte Carlo movement modelling
DOI:
doi:10.5061/dryad.mv02k
摘要:
d for time discretization error. We represent the times of changes in behaviour as forming a thinned Poisson process, allowing exact simulation and Markov chain Monte Car
Data from: Genetic distance for a general non-stationary Markov substitution process
负责人:
关键词:
Markov process;non-stationary;molecular clock;maximum likelihood;Genetic distance
DOI:
doi:10.5061/dryad.g7g0n
摘要:
to be associated with longer edge lengths. The marked improvement in consistency between the general non-stationary Markov model and sequence alignments leads
Data from: A nonstationary Markov model detects directional evolution in hymenopteran morphology
负责人:
关键词:
neutral evolution;non-stationary;morphology;continuous-time Markov model;Symphyta;directional selection;positive selection;Bayesian inference;Hymenoptera
DOI:
doi:10.5061/dryad.0sn23
摘要:
d substitution models assume stationarity of the evolutionary process over the time scale examined, thus impeding the study of directionality. Here we explore

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