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Data from: PHRAPL: phylogeographic inference using approximate likelihoods
负责人:
关键词:
gene flow;Scincella;Multispecies coalescent;population genetics;migration rate;grid search;Sarracenia;isolation-with-migration;Homo Sapiens;genealogical divergence index;coalescent simulations;approximate likelihoods;AIC;parameter optimization;tree topologies
DOI:
doi:10.5061/dryad.1414v
摘要:
sity. To infer this history, the discipline of phylogeography has (to date) used models that simplify the historical demography of the focal organism, for examp
Data from: Differential effect of selection against LINE retrotransposons among vertebrates inferred from whole-genome data and demographic modeling
负责人:
关键词:
purifying selection;comparative population genomics;retrotransposons;Transposable elements;approximate Bayesian computation;composite likelihood optimization
DOI:
doi:10.5061/dryad.qd300cb
摘要:
kleback, green anole, and house mouse, as well as three human populations. Specifically, we inferred a null demographic background utilizing SNP data, whic
Data from: Combining allele frequency and tree-based approaches improves phylogeographic inference from natural history collections
负责人:
关键词:
ddRAD Sequencing;phylogeography;model selection;natural history collections;Alnus rubra
DOI:
doi:10.5061/dryad.288c2
摘要:
of red alder (Alnus rubra) in the Pacific Northwest of North America to generate genomic data for the evaluation of 13 demographic scenarios. The quality of DNA
Data from: Phylogeographic diversification of antelope squirrels (Ammospermophilus) across North American deserts
负责人:
关键词:
Neogene;Ammospermophilus;Mammals;Biogeography;Quaternary;North America;vicariance;phylogeography;Pleistocene
DOI:
doi:10.5061/dryad.gs94r
摘要:
. From our phylogenetic estimates we inferred strong phylogeographic structure within Ammospermophilus and the presence of three well-supported major
Data from: Evidence for climate-driven diversification? A caution for interpreting ABC inferences of simultaneous historical events
负责人:
关键词:
Coalescent Theory;phylogeography;Biogeography;Models\/Simulations;speciation
DOI:
doi:10.5061/dryad.5s07m
摘要:
tentially mitigable with uniform priors over divergence models (rather than classes of models) and more flexible prior distributions on demographic
Data from: Multi-DICE: R package for comparative population genomic inference under hierarchical co-demographic models of independent single
负责人:
关键词:
phylogeography;Population Genetics - Theoretical;Comparative Biology;Population Genetics - Empirical
DOI:
doi:10.5061/dryad.77p06
摘要:
, and a useful strategy to this end is to employ hierarchical co-demographic models that directly test multi-taxa hypotheses within a single, unified analysis
Data from: Evidence for sympatric speciation in a Wallacean ancient lake
负责人:
关键词:
Oryzias orthognathus;Oryzias nebulosus;hybridization;Oryzias nigrimas;Oryzias soerotoi;speciation
DOI:
doi:10.5061/dryad.1nn0206
摘要:
nt-based demographic inference. Demographic inference also suggested introgressive hybridization from an outgroup population. However, differential admixture
Data from: Germ banks affect the inference of past demographic events
负责人:
关键词:
conservation genetics;Evolutionary Theory;molecular evolution;Population Genetics - Theoretical;Ecological Genetics
DOI:
doi:10.5061/dryad.7kp90
摘要:
ly derive the allele frequency spectrum under some simplifying assumptions. We then perform an ABC analysis using two simple demographic sce
Data from: A hierarchical Bayesian approach for handling missing classification data
负责人:
关键词:
N-mixture model;elk;wildlife;Cervus elaphus nelsoni;Hierarchical Bayesian Statistics;abundance;Multi-State Mark-Recapture;population size
DOI:
doi:10.5061/dryad.8h36t01
摘要:
ow the bias that occurs when partial observations were ignored and demonstrated the altered inference for the estimation of demographic ratios. We ap

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