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Data from: Incorporating sampling uncertainty in the geospatial assignment of taxa for virus phylogeography
负责人:
关键词:
2009;H5N1;2006-2015;XML;Egypt;MCC Trees;pdm09;MCMC Trees;BEAST
DOI:
doi:10.5061/dryad.7jr85rj
摘要:
Discrete phylogeography using software such as BEAST considers the sampling location of each taxon as fixed; often to a single location
Data from: Phylogeny and biogeography of the Amazonian Pachyptera (Bignonieae, Bignoniaceae)
负责人:
关键词:
Ancestral area reconstructions;coalescent approaches;haplotype networks;neotropics;species delimitation
DOI:
doi:10.5061/dryad.p8cz8w9kq
摘要:
model in a Bayesian framework (BEAST). The phylogeny of Pachyptera was time-calibrated using BEAST and used to reconstruct the biogeographical history
Data from: Inferring node dates from tip dates in fossil Canidae: the importance of tree priors
负责人:
关键词:
Total Evidence Dating;Hesperocyoninae;Borophaginae;tip-dating;Canis;Canidae;BEASTmasteR;uniform tree prior;MrBayes;Cenozoic;Caninae
DOI:
doi:10.5061/dryad.vn52f
摘要:
derived from previously published monographs. Using a canid morphology dataset, we performed tip-dating using BEAST v. 2.1.3 and MrBayes
Data from: Evolution of a hotspot genus: geographic variation in speciation and extinction rates in Banksia (Proteaceae)
负责人:
关键词:
Bayesian phylogenetics;Proteaceae;BEAST;Posterior distribution;Banksia
DOI:
doi:10.5061/dryad.m1vt9
摘要:
Background: Hotspots of angiosperm species richness and endemism in Mediterranean-climate regions are among the most striking, but least
Data from: Extreme mito-nuclear discordance in a peninsular lizard: the role of drift, selection and climate
负责人:
关键词:
dN\/dS;Pliocene to present time;Urosaurus nigricaudus;ddRAD;climatic niche;BEAST
DOI:
doi:10.5061/dryad.1v1qf6f
摘要:
seaways. This contrasts with very low levels of genetic differentiation in nuclear loci (FST < 0.028) between mtDNA lineages. Analyses of protein
Data from: Effects of phylogenetic reconstruction method on the robustness of species delimitation using single-locus data
负责人:
关键词:
species delimitation;Metabarcoding;Drosophila;DNA Barcoding;PTP;speciation;coalescent;GMYC;OTU;Lepidoptera;molecular dating;Cypraeidae;NGS;rotifera
DOI:
doi:10.5061/dryad.8rv46
摘要:
rally generates diversity estimates that are more robust to different phylogenetic methods. The GMYC is more sensitive, but provides consistent estimates for BEAST
Data from: Maple phylogeny and biogeography inferred from phylogenomic data
负责人:
关键词:
Acer;Aesculus;Dipteronia;Tertiary;disjunct;diversification;sections.;phylogenomics;sections
DOI:
doi:10.5061/dryad.g9j13fm
摘要:
kely ancestral area of Acer as proposed by Wolfe and Tanai and molecular dating using BEAST (Bayesian evolutionary analysis by sampling trees) indicate that se
Data from: Ultrafast evolution and loss of CRISPRs following a host shift in a novel wildlife pathogen, Mycoplasma gallisepticum
负责人:
关键词:
Microbiology;SNPs;Mycoplasma;BEAST;Mycoplasma gallisepticum
DOI:
doi:10.5061/dryad.353tj334
摘要:
strains and a nucleotide substitution rate of 0.8 – 1.2 X 10-5 per site per year both in poultry and in House Finches, an exceptionally fast rate rivaling
Data from: Model selection and parameter inference in phylogenetics using nested sampling
负责人:
关键词:
marginal likelihood;parameter inference;model selection;nested sampling
DOI:
doi:10.5061/dryad.220d6t5
摘要:
for BEAST 2 under the LGPL licence, accessible at https://github.com/BEAST2-Dev/nested-sampling.

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