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Data from: Estimation of contemporary effective population size and population declines using RAD sequence data
负责人:
关键词:
DOI:
doi:10.5061/dryad.6d925
摘要:
Large genomic datasets generated with restriction-site associated DNA sequencing (RADseq), in combination with demographic inference methods, ar
Data from: Genotyping-in-Thousands by sequencing (GT-seq) panel development and application to minimally-invasive DNA samples to support studies
负责人:
关键词:
conservation genetics;Reptiles;Non-invasive sampling;Crotalus oreganus;targeted amplicon sequencing;SNP panel;molecular ecology;RAD-seq;Wildlife Management
DOI:
doi:10.5061/dryad.vr300p0
摘要:
ciated DNA sequencing (RADseq) assembly. Comparisons of genotypes generated within and among RADseq and GT-seq for the same individuals found low ra
Data from: RAD sequencing, genotyping error estimation and de novo assembly optimization for population genetic inference
负责人:
关键词:
Berberis trifolia;Berberis pallida;Berberis moranensis;optimization;error rate;RADseq;Stacks;Berberis alpina;de novo Assembly;Miocene;replicates;Pleistocene
DOI:
doi:10.5061/dryad.g52m3
摘要:
Restriction site-associated DNA sequencing (RADseq) provides researchers with the ability to record genetic polymorphism across thousands of loci
Data from: RADseq dataset with 90% missing data fully resolves recent radiation of Petalidium (Acanthaceae) in the ultra-arid deserts of Namibia
负责人:
关键词:
Acanthaceae;3.6-1.4mya;Petalidium;RADseq;reference-based assembly;Stacks;de novo Assembly;Desert;speciation
DOI:
doi:10.5061/dryad.1t1f5
摘要:
and neighboring Angola. To contribute to understanding this enigmatic diversity, we generated RADseq data for 47 accessions of Petalidium representing 22 species
Data from: Adapterama III: quadruple-indexed, double/triple-enzyme RADseq libraries (2RAD/3RAD)
负责人:
关键词:
Sphyrna tiburo;Rhodnius pallescens;Amblyomma americanum;Sphyrna lewini;Sternotherus depressus;Eurycea bislineata;Wisteria;Gambusia affinis;Ixodidae;Kinosternidae
DOI:
doi:10.5061/dryad.tr87dh0
摘要:
portions of the genome from many individuals (e.g., RADseq, GBS). However, researchers often find the existing methods expensive to initiate and/or difficult
bumble bees using RAD sequencing
负责人:
关键词:
conservation genetics;Bumble bee;Genomics\/Proteomics;insects;Bombus pensylvanicus;Bombus impatiens;RADtag;genetic diversity;Population Genetics - Empirical
DOI:
doi:10.5061/dryad.12j05
摘要:
h population genetic parameters. Restriction site-associated DNA sequencing (RADseq) is used to analyse thousands of variants in the bumble bee species Bombus impatiens
Data from: An in silico comparison of protocols for dated phylogenomics
负责人:
关键词:
exon-capture;Primates;UCE;RADseq;phylogenomics
DOI:
doi:10.5061/dryad.8hs71
摘要:
sequence-enrichment using ultraconserved element and exon-capture probes, and restriction-site-associated DNA sequencing (RADseq and ddRADseq). Here we prese
Data from: Double-digest RAD Sequencing using Ion Proton semiconductor platform (ddRADseq-ion) with non-model organisms
负责人:
关键词:
Genomics\/Proteomics;Natural Selection and Contemporary Evolution;phylogeography;molecular evolution;quantitative genetics;Ecological Genetics
DOI:
doi:10.5061/dryad.7tb72
摘要:
associated DNA sequencing (RAD sequencing or RADseq) has become an established method for SNP genotyping on Illumina sequencing platforms. Her
Data from: Dealing with paralogy in RADseq data: in silico detection and single nucleotide polymorphism validation in Robinia pseudoacacia L.
负责人:
关键词:
repetitive region filtering;restriction site-associated DNA sequencing;depth of coverage;black locust;Robinia pseudoacacia
DOI:
doi:10.5061/dryad.qn4br
摘要:
The RADseq technology allows researchers to efficiently develop thousands of polymorphic loci across multiple individuals with littl
Data from: Wide but not impermeable: Testing the riverine barrier hypothesis for an Amazonian plant species
负责人:
关键词:
Amphirrhox longifolia;double digest RADseq (ddRADseq);single nucleotide polymorphism (SNP);SNPs;Amazon rivers;Violaceae;population tree;ddRADseq;Holocene
DOI:
doi:10.5061/dryad.p8n59
摘要:
h banks of the Rio Branco and Rio Negro in the core Amazon basin. Double digest RADseq was used to identify 8,010 unlinked SNP markers from

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