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Data from: The Arabidopsis kinome: phylogeny and evolutionary insights into functional diversification
负责人:
关键词:
Arabidopsis thaliana;Kinase;phylogeny
DOI:
doi:10.5061/dryad.pq7d7
摘要:
analysis of the Arabidopsis kinase complement, the kinome, with particular focus on gene duplication events. We matched Arabidopsis proteins to a Hidden-Markov Model
Data from: Transcriptome analysis indicates considerable divergence in alternative splicing between duplicated genes in Arabidopsis thaliana
负责人:
关键词:
Arabidopsis thaliana;Nonsense-mediated decay;Alternative splicing;gene duplication;genome duplication;genome evolution
DOI:
doi:10.5061/dryad.g7b25
摘要:
Gene and genome duplication events have created a large number of new genes in plants that can diverge by evolving new expression profiles
Data from: Consequences of whole-genome triplication as revealed by comparative genomic analyses of the wild radish Raphanus raphanistrum and thr
负责人:
关键词:
Arabidopsis thaliana;Brassica rapa;duplicate genes;Genome sequencing;plant genomics;Comparative genomics;Raphanus raphanistrum
DOI:
doi:10.5061/dryad.t50j5
摘要:
Polyploidization events are frequent among flowering plants, and the duplicate genes produced via such events contribute significa
Data from: A Bayesian method for analyzing lateral gene transfer
负责人:
关键词:
Gene duplication Lateral gene transfer Horizontal gene transfer Gene loss Phylogenetics Phylogenomics MCMC Bayesian Reconciliation
DOI:
doi:10.5061/dryad.f78r2
摘要:
ral remain debated. We present a Bayesian MCMC-based method that integrates gene duplication, gene loss, LGT, and sequence evolution, and apply the method
Data from: Cluster expansion of apolipoprotein D (ApoD) genes in teleost fishes
负责人:
关键词:
DOI:
doi:10.5061/dryad.39g63v2
摘要:
duplicated genes show tissue-specific expression patterns and even evolve new gene expression profiles. Positive selection occurred in branches before and after gene duplication
Data from: Cytochrome P450 diversification and hostplant utilization patterns in specialist and generalist moths: birth, death, and adaptation
负责人:
关键词:
Genomics\/Proteomics;insects;plant-insect interactions;molecular evolution;Herbivory;Comparative Physiology;Coevolution;detoxification;Depress aria pastinacella
DOI:
doi:10.5061/dryad.kv67m
摘要:
es. Functional and phylogenetic data suggest a correlation between highly dynamic loci (reflective of extensive gene duplication, functionalization, and in som
Data from: Independent and parallel evolution of new genes by gene duplication in two origins of C4 photosynthesis provides new insight int
负责人:
关键词:
Oryza sativa;parallel evolution;Sorghum bicolor;Zea mays;gene duplication;C4 photosynthesis;Setaria italica;Panicum virgatum;phloem loading
DOI:
doi:10.5061/dryad.17m42
摘要:
two origins of C4 photosynthesis revealed that there was significant parallelism in the duplication and retention of genes coincident with the evoluti
Data from: Screening of duplicated loci reveals hidden divergence patterns in a complex salmonid genome
负责人:
关键词:
Oncorhynchus nerka;polyploid-origin species;copy number variation;genotyping of paralogs;adaptive radiation;whole genome duplication;Ecotypes
DOI:
doi:10.5061/dryad.qb29h
摘要:
findings illustrate that including duplicated loci in genomic analyses enables novel insights into the evolutionary consequences of WGDs and local segmental gene duplications.
Data from: Different gene families in Arabidopsis thaliana transposed in different epochs and at different frequencies throughout the rosids
负责人:
关键词:
Arabidopsis;genomics;gene transposition
DOI:
doi:10.5061/dryad.275kv81m
摘要:
hout Angiosperm evolutionary time. Other, non-syntenic gene families are prone to deletion, tandem duplication, and transposition. Here we describe the chromosomal positi
Data from: Gene-dosage effects on fitness in recent adaptive duplications: ace-1 in the mosquito Culex pipiens
负责人:
关键词:
trade-offs;Evolutionary genomics;molecular evolution;Selection - Natural;Culex pipiens;Adaptation;Fitness
DOI:
doi:10.5061/dryad.2s22q
摘要:
Gene duplications have long been advocated to contribute to the evolution of new functions. The role of selection in their early spread is mor

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