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Data from: PSMC (pairwise sequentially Markovian coalescent) analysis of RAD (restriction site associated DNA) sequencing data
负责人:
关键词:
Pairwise Sequential Markovian Coalescent (PSMC);whole genome sequencing;threespine stickleback;demographic history;RAD sequencing
DOI:
doi:10.5061/dryad.0618v
摘要:
ability to reference genome-aligned restriction site associated DNA (RAD) data. We find that RAD data can potentially be used for PSMC analysis, but at present
Data from: Genome-wide investigation of adaptation to harmful algal blooms in common bottlenose dolphins (Tursiops truncatus)
负责人:
关键词:
restriction site-associated DNA sequencing;common bottlenose dolphin;harmful algal bloom;Tursiops truncatus;Adaptation
DOI:
doi:10.5061/dryad.579kj
摘要:
-by-sequencing, greatly enable the genomic study of such adaptation in natural populations. We used restriction site-associated DNA (RAD) sequencing to investigate
Data from: Population genomics of divergence within an obligate pollination mutualism: selection maintains differences between Joshua tree species
负责人:
关键词:
Yucca brevifolia;Asparagaceae;Yucca jaegeriana;Yucca;genomics;Population Genetics Selection;pollinators;Holocene;speciation
DOI:
doi:10.5061/dryad.7pj4t
摘要:
differences between them, and determine whether genetic variants associated with style length show signatures of selection. METHODS: Using restriction-site
Data from: Phylogeny of Morella rubra and its relatives (Myricaceae) and genetic resources of Chinese bayberry using RAD sequencing
负责人:
关键词:
5 Ma;phylogeny;Morella rubra;SNP markers;restriction site-associated DNA
DOI:
doi:10.5061/dryad.589g3
摘要:
Phylogenetic relationships among Chinese species of Morella (Myricaceae) are unresolved. Here, we use restriction site-associated DNA sequencing
Data from: A framework phylogeny of the American oak clade based on sequenced RAD data
负责人:
关键词:
Expressed sequence tags (EST);Quercus;Next-generation sequencing;plant systematics;Fagaceae;restriction-site associated DNA;partitioned RAD;phylogenomics
DOI:
doi:10.5061/dryad.ts2hj
摘要:
e, we utilize next-generation sequencing of restriction-site associated DNA (RAD-Seq) to resolve a framework phylogeny of a predominantly American clade of oaks
Data from: Less is more: extreme genome complexity reduction with ddRAD using Ion Torrent semiconductor technology
负责人:
关键词:
Eurasian perch SNP development and validation de novo assembly next-generation sequencing population genomics DNA pooling
DOI:
doi:10.5061/dryad.s2405
摘要:
molecular evolution and evolutionary biology to animal and plant breeding and forensics. In this study, we describe the development of restriction-site associated DNA
before restriction-site associated (RAD) sequencing and its effects on population genetic statistics
负责人:
关键词:
population genetics;Heterozygosity;DNA contamination;Pacific herring;Clupea pallasii;RAD sequencing
DOI:
doi:10.5061/dryad.g28rh86
摘要:
minutes in bleach or left untreated, and extracted DNA was used to prepare DNA libraries using a restriction-site associated DNA (RAD) approach. Our result
Data from: Impacts of degraded DNA on restriction enzyme associated DNA sequencing (RADSeq)
负责人:
关键词:
SNP;Reduced Representation Libraries;Coregonus clupeaformis;ddRADseq
DOI:
doi:10.5061/dryad.mf1ck
摘要:
Degraded DNA from suboptimal field sampling is common in molecular ecology. However, its impact on techniques that use restriction site associated ne

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