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Data from: Molecular dynamics investigation of gluazo, a photo-switchable ligand for the glutamate receptor GluK2
负责人:
关键词:
umbrella sampling;photochromic ligand;photoisomerization;molecular dynamics;GluK2
DOI:
doi:10.5061/dryad.7r71q
摘要:
Photochromic ligands (PCLs), defined as photoswitchable molecules that are able to endow native receptors with a sensitivity towards light, have bec
Data from: Crowding induces entropically-driven changes to DNA dynamics that depend on crowder structure and ionic conditions
负责人:
关键词:
single-molecule tracking;macromolecular crowding;entropic forces;DNA conformation;DNA diffusion;depletion interactions;DNA Compaction;fluorescence microscopy
DOI:
doi:10.5061/dryad.77g469g
摘要:
and conformational dynamics of large DNA molecules. Specifically, we measure the mean-squared center-of-mass displacements, as well as the conformational size, shape
Data from: Evolutionary diversification of reef corals: a comparison of the molecular and fossil records
负责人:
关键词:
Recent;Macroevolution;Mesozoic;phylogenetics;Cenozoic;Scleractinia;fossils;paleobiology
DOI:
doi:10.5061/dryad.s7dj0
摘要:
Understanding historical patterns of diversity dynamics is of paramount importance for many evolutionary questions. The fossil record has lon
Data from: A hyperparasite affects the population dynamics of a wild plant pathogen
负责人:
关键词:
Disease Hyperparasite Metapopulation Molecular detection Regulation Plant Pathogen
DOI:
doi:10.5061/dryad.mv332
摘要:
. We conclude that this hyperparasite may likely impact on its host population dynamics and argue for increased focus on the role of hyperpar
Data from: Antibiotic uptake across gram-negative outer membranes: better predictions towards better antibiotics
负责人:
关键词:
outer membrane vesicles;molecular dynamics simulation;outer membrane porins;membrane permeability
DOI:
doi:10.5061/dryad.vdncjsxq1
摘要:
-throughput experimental assay of outer membrane vesicle swelling. Parallel molecular dynamics simulations of compound uptake through E. coli OmpF are use
Data from: A multiscale biophysical model for the recruitment of actin nucleating proteins at the membrane interface
负责人:
关键词:
actin filament formation;actin cytoskeleton;Molecular modeling;molecular dynamics
DOI:
doi:10.5061/dryad.qbzkh18f6
摘要:
actin-binding proteins, mDia2, NWASP, and gelsolin, to membranes containing PI(4,5)P2 lipids. We perform molecular dynamics simulations on the protein-bila
Data from: Molecular mechanism of viscoelastic polymer enhanced-oil-recovery in nanopores
负责人:
关键词:
enhanced oil recovery;polymer flooding;viscoelasticity;molecular dynamics simulation;oil displacement
DOI:
doi:10.5061/dryad.61g8620
摘要:
at significance for the advancement of oil exploitation. Using molecular dynamics simulations, we investigated the detailed process of the viscoelastic polymer
Data from: Modelling dynamics in protein crystal structures by ensemble refinement
负责人:
关键词:
DOI:
doi:10.5061/dryad.5n01h
摘要:
. We generated ensembles of structures by time-averaged refinement, where local molecular vibrations were sampled by molecular-dynamics (MD) simulation whilst
Data from: Structural consequence of the most frequently recurring cancer-associated substitution in DNA polymerase ?
负责人:
关键词:
molecular dynamics;DNA Polymerase;Mutation;Cancer
DOI:
doi:10.5061/dryad.1sb340g
摘要:
ing towards the exonuclease site. Molecular dynamics simulations suggest that R301 interferes with DNA binding to the exonuclease site, an outcome
Data from: Ensembler: enabling high-throughput molecular simulations at the superfamily scale
负责人:
关键词:
comparative modeling;molecular dynamics simulation;distributed simulation
DOI:
doi:10.5061/dryad.7fg32
摘要:
with biomolecular simulation. While computational infrastructure has grown rapidly, simulations on an omics scale are not yet widespread, primarily because softwar

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