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Data from: Discovery and information-theoretic characterization of transcription factor binding sites that act cooperatively
负责人:
关键词:
Drosophila;mutual information;Transcription Factor Binding Sites;Position Weight Matrix
DOI:
doi:10.5061/dryad.8b203
摘要:
in the flanking DNA sequence, by conditioning known binding site loci on the presence or absence of additional binding sites in the flanking sequence of each site
Data from: The phylogenetic utility and functional constraint of microRNA flanking sequences
负责人:
关键词:
flanking sequences;non-coding RNA;microRNA;phylogenetics;Evolution
DOI:
doi:10.5061/dryad.49q24
摘要:
and align these sequences from even fragmentary datasets. We also identify significant sequence conservation in the regions directly flanking miRNA genes
Data from: Genetic distance as an alternative to physical distance for definition of gene units in association studies
负责人:
关键词:
pathway analysis;recombination rate;Gene definition;Gene-set analysis;Recombination map;Homo Sapiens;Genetic distance;genetic map
DOI:
doi:10.5061/dryad.p58hb
摘要:
of analysis. These genes include the coding sequence plus flanking sequences. Polymorphisms in the flanking sequences are of interest because they involve
Data from: Ultraconserved elements anchor thousands of genetic markers for target enrichment spanning multiple evolutionary timescales
负责人:
关键词:
sequence capture;Ultra-conserved elements;Target Enrichment;genetic markers;phylogenomics;flanking sequence
DOI:
doi:10.5061/dryad.64dv0tg1
摘要:
an in silico experiment to demonstrate that sequence flanking 2,030 UCEs contains information sufficient to enable unambiguous recovery of the es
Data from: Recurrent gene deletions and the evolution of adaptive cyanogenesis polymorphisms in white clover (Trifolium repens L.)
负责人:
关键词:
molecular evolution;Trifolium repens (Fabaceae);Angiosperms;Ecological Genetics;Adaptation
DOI:
doi:10.5061/dryad.ks6g0
摘要:
ng a sample of 65 plants, we investigated the molecular evolution of sequences flanking the two underlying cyanogenesis genes: Ac/ac (controlling the presence
Data from: Microsatellite markers from the Ion Torrent: a multi-species contrast to 454 shotgun sequencing
负责人:
关键词:
Macrozamia riedlei;Podocarpus drouynianus;Plant Mating Systems;Landscape Genetics;Ricinocarpos brevis;Angiosperms;Ecological Genetics;Gymnosperms;Population Genetics - Empirical
DOI:
doi:10.5061/dryad.vv82q
摘要:
r average length sequences and therefore greater flexibility in producing markers with variable product length, due to longer flanking regions, which is ideal
Data from: Rapid microsatellite isolation from a butterfly by de novo transcriptome sequencing: performance and a comparison with AFLP-derived
负责人:
关键词:
Euphydryas editha;454;SSR;Next-generation sequencing;EST;variable number sequence repeats;simple sequence repeats;VNTR
DOI:
doi:10.5061/dryad.1540
摘要:
to circumvent this problem by bioinformatic mining of microsatellite sequences from a de novo-sequenced transcriptome of a butterfly (Euphydryas editha
Data from: A universal probe set for targeted sequencing of 353 nuclear genes from any flowering plant designed using k-medoids clustering
负责人:
关键词:
Nuclear Genes;k-means clustering;Target Enrichment;HybSeq;Machine Learning;Angiosperms;phylogenomics
DOI:
doi:10.5061/dryad.s3h9r6j
摘要:
pecially in the angiosperms (flowering plants). We used multiple sequence alignments from over 600 angiosperms for 353 putatively single-copy protein-coding genes identified
Data from: De novo transcriptome characterization and development of genomic tools for Scabiosa columbaria L. using next-generation sequencing
负责人:
关键词:
conservation genetics;Transcriptomics;Inbreeding;Scabiosa columbaria;Conservation Biology
DOI:
doi:10.5061/dryad.8160
摘要:
t of which are well covered by contig sequences. In addition, we identified 4,320 microsatellite loci, of which 856 had flanking sequences suitable

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