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Data from: Coalescent versus concatenation methods and the placement of Amborella as sister to water lilies
- 负责人：
- DOI：
- doi:10.5061/dryad.qb251
- 摘要：
- e topologically identical except with respect to the degree of deep coalescence and branch lengths. Our results collectively suggest that the Amborella al
Data from: Detecting hybridization by likelihood calculation of gene tree extra lineages given explicit models
- 负责人：
- Olave, Melisa
- DOI：
- doi:10.5061/dryad.q084s
- 摘要：
- Explanations for gene tree discordance with respect to a species tree are commonly attributed to deep coalescence (al
Data from: Phylogenomics of phrynosomatid lizards: conflicting signals from sequence capture versus restriction site associated DNA sequencing
- 负责人：
- DOI：
- doi:10.5061/dryad.4vt08
- 摘要：
- for phylogenetic analysis. These methods are typically used to collect data at different evolutionary timescales; sequence capture is primarily used for obtaining conserved
Data from: Inferring species networks from gene trees in high-polyploid North American and Hawaiian violets (Viola, Violaceae)
- 负责人：
- DOI：
- doi:10.5061/dryad.68722
- 摘要：
- -polyploids (i.e., organisms with more than six sets of nuclear chromosomes), the signatures of gene homoeolog loss, deep coalescence and polyploidy may bec
Data from: Assessing combinability of phylogenomic data using Bayes Factors
- 负责人：
- DOI：
- doi:10.5061/dryad.gt81779
- 摘要：
- using marginal likelihood to assess data subset combinability when data subsets have varying levels of phylogenetic discordance due to deep coalescence
Data from: The identification of the closest living relative(s) of tetrapods: phylogenomic lessons for resolving short ancient internodes
- 负责人：
- DOI：
- doi:10.5061/dryad.gd74v
- 摘要：
- and applied different correction techniques. A multispecies coalescent approach is used to account for deep coalescence that might come from the short and deep
Data from: PHRAPL: phylogeographic inference using approximate likelihoods
- 负责人：
- DOI：
- doi:10.5061/dryad.1414v
- 摘要：
- le model parameters include coalescence time among populations or species, gene flow, and population size. We describe the method and test its performance
Data from: Sex-biased dispersal obscures species boundaries in integrative species delimitation approaches
- 负责人：
- DOI：
- doi:10.5061/dryad.g97d432
- 摘要：
- . Simulations of population divergence with migration, corresponding to the biology of Pachypus, showed that female philopatry strongly increases reciprocal
Data from: Metagenetic community analysis of microbial eukaryotes illuminates biogeographic patterns in deep-sea and shallow water sediments
- 负责人：
- DOI：
- doi:10.5061/dryad.vd094
- 摘要：
- . In addition, low genetic divergence between geographically disparate deep-sea sites suggests either a shorter coalescence time between deep-sea regions
Data from: Multiple instances of paraphyletic species and cryptic taxa revealed by mitochondrial and nuclear RAD data for Calandrella larks (Aves
- 负责人：
- DOI：
- doi:10.5061/dryad.16mg6
- 摘要：
- y supported interspecific relationships. However, coalescence analyses of the RAD data, analysed in SNAPP both with and without an outgroup, received equal
