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Data from: Effects of genotype on rates of substitution during experimental evolution
负责人:
关键词:
Escherichia coli;molecular evolution;epistasis;Selection - Experimental;variation
DOI:
doi:10.5061/dryad.36td2
摘要:
ons experimentally evolved in the presence of a quinolone antibiotic, we found that rates of substitution varied by genotype, with evidence for a contribution from
Data from: Exploring the relationships between mutation rates, life history, genome size, environment and species richness in flowering plants
负责人:
关键词:
Evolution: molecular;Macroevolution
DOI:
doi:10.5061/dryad.31614
摘要:
, synonymous rates are correlated to nonsynonymous substitution rates, suggesting that increasing the mutation rate results in a faster rate of genome evoluti
Data from: Grouping substitution types into different relaxed molecular clocks
负责人:
关键词:
DOI:
doi:10.5061/dryad.2ts15
摘要:
(or context-independent) nucleotide substitution types according to how their rates change and then using the grouping for divergence time estimati
Data from: Elevated substitution rate estimates from ancient DNA: model violation and bias of Bayesian methods
负责人:
关键词:
Demography;Bayesian;ancient DNA;mutation rate;coalescent simulation;heterochronous sequences
DOI:
doi:10.5061/dryad.1355
摘要:
for the estimation of substitution rates and divergence dates as an alternative to fossil and geological calibration. This comes at a time of growing interes
Data from: Sequence entropy of folding and the absolute rate of amino acid substitutions
负责人:
关键词:
protein evolution;epistasis;Coevolution;substitution rate;Contingency;transition state theory;statistical mechanics;evolutionary Stokes shift;entrenchment
DOI:
doi:10.5061/dryad.7b8vb
摘要:
on. We constructed a mechanistic framework for modelling amino acid substitution rates that uses the formalisms of statistical mechanics, with principles
Data from: Gene tree discordance causes apparent substitution rate variation
负责人:
关键词:
Substitution rates;hemiplasy;gene tree discordance;incomplete lineage sorting
DOI:
doi:10.5061/dryad.17k8j
摘要:
Substitution rates are known to be variable among genes, chromosomes, species, and lineages due to multifarious biological processes. Here, we cons
Data from: Markov-modulated continuous-time Markov chains to identify site- and branch-specific evolutionary variation in BEAST
负责人:
关键词:
Markov-modulated models;heterotachy;BEAGLE;phylogenetics;Bayesian inference;covarion;BEAST
DOI:
doi:10.5061/dryad.230s5h0
摘要:
extensions that accommodate heterogeneity of substitution rates across sites, heterogeneity in the process over time in a site-specific manner remains
Data from: The local-clock permutation test: a simple test to compare rates of molecular evolution on phylogenetic trees
负责人:
关键词:
molecular clock;substitution rate;likelihood ratio test;LCPT;mutation rate;LRT
DOI:
doi:10.5061/dryad.7886
摘要:
Rates of molecular evolution vary substantially between lineages, and a growing research effort is directed at uncovering the causes and consequences

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