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Data from: Squamate Conserved Loci (SqCL): a unified set of conserved loci for phylogenomics and population genetics of squamate reptiles
负责人:
Singhal, Sonal
关键词:
phylogenomics target capture comparative population genomics squamate reptiles Reptiles
DOI:
doi:10.5061/dryad.r0q02
摘要:
) – and both approaches have proven useful for addressing questions in phylogenomics, phylogeography, and population genomics. However, these two sets of loci
Data from: A stable phylogenomic classification of Travunioidea (Arachnida, Opiliones, Laniatores) based on sequence capture
负责人:
Derkarabetian, Shahan
关键词:
Phylogenomics ultraconserved elements cave evolution harvestmen historical biogeography Holarctic target enrichment taxonomy
DOI:
doi:10.5061/dryad.tj48997
摘要:
t relationships at all taxonomic levels have yet to be explored from a phylogenomics perspective. Travunioidea is an early-diverging lineage of laniatorean
Data from: HiMAP: robust phylogenomics from highly multiplexed amplicon sequencing
负责人:
关键词:
multiplex PCR;systematics;Tephritidae;phylogenetics;Amplicon Sequencing;phylogenomics
DOI:
doi:10.5061/dryad.6524f
摘要:
-100-fold more loci than those generated using traditional Sanger-based approaches. Here, we demonstrate a new approach for building phylogenomic
Data from: In the shadows: phylogenomics and coalescent species delimitation unveil cryptic diversity in a Cerrado endemic lizard (Squamata
负责人:
关键词:
bayesian species delimitation;Anthropocene;Neogene;BPP;Tropiduridae;Tropidurus;Paleocene;neotropics;phylogeography;Tropidurus itambere;Anchored Hybrid Enrichment;cryptic species;Squamata
DOI:
doi:10.5061/dryad.1hs2m
摘要:
. The statistical methods to recognise such cryptic lineages are rapidly advancing, but have rarely been applied to genomic-scale datasets. Herein, we used phylogenomic
Data from: Information dropout patterns in restriction site associated DNA phylogenomics and a comparison with multilocus Sanger data in a species
负责人:
关键词:
RAD phylogenomics;RAD-Sequencing;allelic dropout;SNP dropout;Geometridae;Locus dropout;Lepidoptera;Parsimony informative SNPs;molecular systematics;Eupithecia;ddRAD Sequencing;RAD sequencing
DOI:
doi:10.5061/dryad.474nd
摘要:
te with our data our expectation of a positive correlation between them. We conclude that RAD methods provide a powerful tool for phylogenomics at an intermediate
Data from: Conflicting phylogenomic signals reveal a pattern of reticulate evolution in a recent high-Andean diversification (Asteraceae: Astereae
负责人:
关键词:
reticulate evolution;Astereae;Asteraceae;ddRAD;hybridization;rapid diversification;Diplostephium;introgression;phylogenomics;genome skimming
DOI:
doi:10.5061/dryad.cn74h
摘要:
study analyzes the phylogenetic signal of genomic regions with different inheritance patterns using genome skimming and ddRAD-seq in a species-rich Andean
Data from: Phylogenomic analyses support traditional relationships within Cnidaria
负责人:
关键词:
phylogenomics phylogenetics transcriptomics
DOI:
doi:10.5061/dryad.4b6d3
摘要:
position of Ceriantharia. Taken together, these results further resolve deep cnidarian relationships, largely support traditional phylogenetic views
Data from: Anchored phylogenomics improves the resolution of evolutionary relationships in the rapid radiation of Protea L.
负责人:
关键词:
Coalescence;Radiation;Anchored phylogenomics;phylogenetics;Proteaceae;Protea
DOI:
doi:10.5061/dryad.vj32s
摘要:
ous nuclear loci using anchored phylogenomics. We compare several approaches for building species trees, and explore gene tree–species tree discrepancies
Data from: A framework phylogeny of the American oak clade based on sequenced RAD data
负责人:
关键词:
Expressed sequence tags (EST);Quercus;Next-generation sequencing;plant systematics;Fagaceae;restriction-site associated DNA;partitioned RAD;phylogenomics
DOI:
doi:10.5061/dryad.ts2hj
摘要:
whose crown age is estimated at 23–33 million years old. Using a recently developed analytical pipeline for RAD-Seq phylogenetics, we created

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