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Data from: High-throughput identification of informative nuclear loci for shallow-scale phylogenetics and phylogeography
负责人:
关键词:
Pseudacris;Hyla;Next-generation sequencing;Acris;phylogenetics;reduced-representation library;Illumina HiSeq;anonymous nuclear markers;phylogeography
DOI:
doi:10.5061/dryad.vh151q1c
摘要:
iable and informative nuclear loci for the question of interest. Previous approaches to marker generation have generally required extensive testing of loci of unknown
Data from: Conserved genetic regions across angiosperms as tools to develop single copy nuclear markers in gymnosperms: an example using cycads
负责人:
关键词:
Zamia lucayana;cycads;Zamia integrifolia;Zamia vazquezii;phylogeography;Zamia pumila;molecular marker development;Zamia portoricensis;nuclear genome;Zamia angustifolia;Zamia erosa
DOI:
doi:10.5061/dryad.k2f0n
摘要:
and phylogenetic studies in Cycadales. Two strategies were employed to select target loci: 1) a tblastX search of Arabidopsis conserved ortholog sequence (COS) set
Data from: Patterns of cyto-nuclear linkage disequilibrium in Silene latifolia: genomic heterogeneity and temporal stability
负责人:
关键词:
cyto-nuclear;microsatellite;Silene;atp1 SNP;Silene latifolia;Holocene;Caryophyllaceae;linkage disequilibrium
DOI:
doi:10.5061/dryad.7c730
摘要:
Non-random association of alleles in the nucleus and cytoplasmic organelles, or cyto-nuclear linkage disequilibrium (LD), is both an importa
of multiple nuclear loci
负责人:
关键词:
Multispecies coalescent;nuclear single-copy genes;in-silico cloning;polyploidy;Hordeum;phylogeny;Evolution;systematics
DOI:
doi:10.5061/dryad.fn2nt
摘要:
, knowledge of parental relationships is essential. One chloroplast and 12 nuclear single-copy loci were amplified by polymerase chain reaction (PCR) in al
Data from: Fast molecular evolution associated with high active metabolic rates in poison frogs
负责人:
关键词:
DOI:
doi:10.5061/dryad.gg39253p
摘要:
of molecular evolution of nuclear and mitochondrial loci from a large ectotherm clade, the poison frogs. My results support a strong positive association between mass
Data from: Comparison of taxon-specific versus general locus sets for targeted sequence capture for plant phylogenomics
负责人:
关键词:
Lamiales;PPR genes;hybrid enrichment;Scrophulariaceae;single-copy nuclear genes;Buddleja;Buddleja globosa
DOI:
doi:10.5061/dryad.v6q0p
摘要:
nuclear loci. Most published studies in plants have used taxon-specific locus sets developed individually for a clade using multiple genomic
Data from: Deep phylogenetic incongruence in the angiosperm clade Rosidae
负责人:
关键词:
incomplete lineage sorting;Fabidae;Incongruence;hybridization;Rosidae;COM clade;introgression;phylogenomics;Malvidae
DOI:
doi:10.5061/dryad.7sg58
摘要:
- and multi-copy nuclear loci indicate that most loci support the placement of COM with Malvidae, fewer loci support COM with Fabidae, and almost no loci
us and nuclear SSR loci in Prunus lannesiana var. speciosa
负责人:
关键词:
Prunus lannesiana var. speciosa;S-alleles;Negative frequency-dependent selection;SSR;self-incompatibility;Paternity;Prunus;Holocene
DOI:
doi:10.5061/dryad.7c425
摘要:
negative frequency-dependent selection (NFDS) were evaluated in Prunus lannesiana var. speciosa in comparison with nuclear simple sequence repeat (SSR) loci that seem
Data from: Characterization of new microsatellite loci isolated from Santiria trimera (Burseraceae)
负责人:
关键词:
Santiria trimera;genetic diversity;species delimitation;microsatellite markers;phylogeography
DOI:
doi:10.5061/dryad.dp380n8s
摘要:
e successfully amplified on three different morphotypes of S. trimera. For six of the seven loci, there is at least one private allele for one of the thr
Data from: Phylogenetic marker development for target enrichment from transcriptome and genome skim data: the pipeline and its application
负责人:
关键词:
Species tree;cytonuclear discordance;Target Enrichment;low-copy nuclear genes;Oxalis;genome skimming
DOI:
doi:10.5061/dryad.dn08t
摘要:
Phylogenetics benefits from using a large number of putatively independent nuclear loci and their combination with other sources of information, suc

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