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Data from: Species tree estimation of North American chorus frogs (Hylidae: Pseudacris) with parallel tagged amplicon sequencing
负责人:
关键词:
reduced representation library;Pseudacris;anonymous nuclear locus;phylogenetics;targeted amplicon sequencing;high-throughput sequencing
DOI:
doi:10.5061/dryad.23rc0
摘要:
for 44 individuals on 1/3 of an Illumina MiSeq run, obtaining 96.5% of the targeted amplicons at less than 20% of the cost of traditional Sanger se
Data from: Microfluidic PCR-based target enrichment: a case study in two rapid radiations of Commiphora (Burseraceae) from Madagascar
负责人:
关键词:
Illumina MiSeq;microfluidic PCR;genome-tagged amplification;Miocene;Burseraceae;targeted amplicon sequencing;Commiphora;phylogenomics;Bursera
DOI:
doi:10.5061/dryad.591q3
摘要:
and Illumina MiSeq, we generated nuclear, subgenomic libraries for 96 species simultaneously and sequenced them for a total cost of ca. $6000 USD. Approximately half
Data from: A from-benchtop-to-desktop workflow for validating HTS data and for taxonomic identification in diet metabarcoding studies
负责人:
关键词:
Metabarcoding;Zingel asper;taxonomic assignment;Diet studies;Pomatoschistus microps;COI;HTS data filtering
DOI:
doi:10.5061/dryad.f40v5
摘要:
was amplified by combining two minibarcoding primer sets to maximize the taxonomic coverage. Amplicons were sequenced by an Illumina MiSeq platform. We developed
Data from: Disease-free monoculture farming by fungus-growing termites
负责人:
关键词:
symbiosis amplicon sequencing LCMS
DOI:
doi:10.5061/dryad.t6t12
摘要:
termite species (two genera). Internal Transcribed Spacer (ITS) gene analyses using 454 pyrosequencing and Illumina MiSeq showed that non-Termitomyces fungi
Data from: Don’t put all your eggs in one basket: a cost-effective and powerful method to optimize primer choice for rRNA environmental community
负责人:
关键词:
Fungi;Fluidigm;Mock Community;ITS;Primer Selection;LSU
DOI:
doi:10.5061/dryad.tn6vn
摘要:
community-wide sequencing effort. Here we use Fluidigm’s micro-fluidic Access Arrays (IFC) followed by Illumina? MiSeq Nano sequencing on a culture-derived
Data from: 2b-RAD genotyping for population genomic studies of Chagas disease vectors: Rhodnius ecuadoriensis in Ecuador
负责人:
关键词:
Vector control;population genomics;Chagas disease;Rhodnius ecuadoriensis;2b-RAD geotyping;Next Generation Sequencing
DOI:
doi:10.5061/dryad.02bf1
摘要:
collected from the central coast and southern Andean region of Ecuador, from June 2006 to July 2013. 2b-RAD sequencing data was performed on an Illumina MiSeq
Data from: Analysis of microsatellite loci in tree of heaven (Ailanthus altissima (Mill.) Swingle) using SSR-GBS
负责人:
关键词:
genotyping by sequencing;SNP;microsatellite;Amplicon Sequencing;Ailanthus altissima;Tree of heaven
DOI:
doi:10.5061/dryad.873b2j2
摘要:
w microsatellite markers for the tree of heaven by applying an NGS-based method using the Illumina MiSeq platform. NGS technology was proved to be an effective method
Data from: Shifts of tundra bacterial and archaeal communities along a permafrost thaw gradient in Alaska
负责人:
关键词:
Environmental DNA;climate change;bacteria;Bioinfomatics\/Phyloinfomatics
DOI:
doi:10.5061/dryad.p1602
摘要:
This study investigated soil bacterial and archaeal communities by Illumina MiSeq sequencing of 16S rRNA gene amplicons across a permafrost thaw gradient
Data from: Degenerate adaptor sequences for detecting PCR duplicates in reduced representation sequencing data improve genotype calling accuracy
负责人:
关键词:
Wasmannia auropunctata;Mixornis gularis;Next-generation sequencing;genotyping;Saccharomyces cervisiae;RAD-seq;methodology
DOI:
doi:10.5061/dryad.34dt1
摘要:
four-base tag to the first index read, which allows duplicate discrimination in aligned data. This approach was validated on the Illumina MiSeq platform, usi

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