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Data from: Genome-scale phylogenetics: inferring the plant tree of life from 18,896 gene trees
- 负责人：
- DOI：
- doi:10.5061/dryad.7881
- 摘要：
- gene duplications and losses. Gene tree parsimony is a phylogenetic optimization criterion in which a species tree is selected that minimizes the number of gene
Data from: Phylogeny of frogs of the Physalaemus pustulosus species group, with an examination of data incongruence
- 负责人：
- DOI：
- doi:10.5061/dryad.68
- 摘要：
- tibility of data partitions with suboptimal trees, and homogeneity of data partitions. Combined parsimony analysis of all data equally weighted yielded the same tree
Data from: Parsimonious inference of hybridization in the presence of incomplete lineage sorting
- 负责人：
- Nakhleh, Luay
- 关键词：
- phylogenetic networks gene trees hybridization incomplete lineage sorting coalescent multi-labeled trees
- DOI：
- doi:10.5061/dryad.sr534
- 摘要：
- a parsimony criterion for reconciling gene trees within the branches of a phylogenetic network, and a local search heuristic for inferring phylogenetic ne
Data from: Turning the crown upside down: gene tree parsimony roots the eukaryotic tree of life
- 负责人：
- Burleigh, J. Gordon
- DOI：
- doi:10.5061/dryad.11vq033v
- 摘要：
- The first analyses of gene sequence data indicated that the eukaryotic tree of life consisted of a long stem of microbial groups ‘topped’ by a crown
Data from: A Bayesian supertree model for genome-wide species tree reconstruction
- 负责人：
- DOI：
- doi:10.5061/dryad.74922
- 摘要：
- ulated and empirical data sets, in spite of ignoring branch lengths. Our results show in addition that under complex simulation scenarios , gene tree parsimony is als
Data from: Multiple data sets, congruence, and hypothesis testing for the phylogeny of basal groups of the lizard genus Sceloporus (Squamata
- 负责人：
- DOI：
- doi:10.5061/dryad.604
- 摘要：
- titions. Several deep nodes in the tree recovered by a number of methods, including equally weighted and differentially weighted parsimony
Data from: Interrogating genomic-scale data for Squamata (lizards, snakes, and amphisbaenians) shows no support for key traditional morphological relationships
- 负责人：
- DOI：
- doi:10.5061/dryad.sm6jb0p
- 摘要：
- properties, such as an insufficient number of parsimony informative sites), may account for most gene and species-tree discordance. We find overwhelming si
Data from: A Bayesian method for analyzing lateral gene transfer
- 负责人：
- 关键词：
- Lateral gene transfer Horizontal gene transfer Gene duplication Gene loss Phylogenetics Phylogenomics MCMC Bayesian Reconciliation
- DOI：
- doi:10.5061/dryad.f78r2
- 摘要：
- gene tree and cannot choose between sometimes wildly differing most-parsimonious solutions. Moreover, in many studies, simple heuristics are applied tha
Data from: Hemocyanin gene family evolution in spiders (Araneae), with implications for phylogenetic relationships and diverge
- 负责人：
- DOI：
- doi:10.5061/dryad.105c0
- 摘要：
- family and estimate spider relationships using these conserved loci. Our hemocyanin gene tree is largely consistent with the previous hypotheses of par
Data from: Complete genome sequences provide a case study for the evaluation of gene-tree thinking
- 负责人：
- DOI：
- doi:10.5061/dryad.7c7q0
- 摘要：
- . Analysis of these 55 genes in maximum parsimony (MP) and maximum likelihood (ML) produced 164 unique topologies (out of 166 resulting topologies). No genes from
