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Data from: Bayesian long branch attraction bias and corrections
负责人:
关键词:
Bayesian methods;Bias;star tree;posterior probability;Long branch attraction
DOI:
doi:10.5061/dryad.g180s
摘要:
Previous work on the star-tree paradox has shown that Bayesian methods suffer from a long branch attraction bias. That work is extended to se
Data from: Evaluating multilocus Bayesian species delimitation for discovery of cryptic mycorrhizal diversity
负责人:
关键词:
Caladenia;species delimitation;Serendipita vermifera;Bayesian;phylogeny;Serendipita;mycorrhizae;Holocene;Sebacina;coalescent;orchid mycorrhizal fungi
DOI:
doi:10.5061/dryad.2hf40
摘要:
admixture analysis, and (c) mtDNA variation. We implemented two coalescent-based Bayesian methods to determine which species hypothesis best fitted our data. Bot
Data from: The evolutionary relationships and age of Homo naledi: an assessment using dated Bayesian phylogenetic methods
负责人:
关键词:
Dinaledi hominins;Bayesian phylogenetic analysis;genus Homo;Morphological clock;Homo naledi
DOI:
doi:10.5061/dryad.d7r4g
摘要:
to carry out three analyses. First, we performed a dated Bayesian analysis to generate estimates of the evolutionary relationships of fossil hominins including
Data from: Recommendations for using msBayes to incorporate uncertainty in selecting an ABC model prior: a response to Oaks et al.
负责人:
关键词:
prior;msBayes;Bayesian model averaging;synchronous divergence;approximate Bayesian computation
DOI:
doi:10.5061/dryad.17f8v
摘要:
Prior specification is an essential component of parameter estimation and model comparison in Approximate Bayesian computation (ABC). Oaks et al. pr
Data from: Probabilistic methods outperform parsimony in the phylogenetic analysis of data simulated without a probabilistic model
负责人:
关键词:
Likelihood;morphology;parsimony;Simulation;Bayesian;phylogenetics
DOI:
doi:10.5061/dryad.h8r2629
摘要:
studies have suggested that analyses of morphological character data using the Bayesian and Maximum likelihood Mk model provide phylogenies of higher
Data from: Bayesian analysis of a morphological supermatrix sheds light on controversial fossil hominin relationships
负责人:
关键词:
Bayesian phylogenetics;Australopithecus sediba;Hominin phylogeny;human evolution;Homo floresiensis
DOI:
doi:10.5061/dryad.5025v
摘要:
ly developed Bayesian methods for building trees of serially sampled tips to test among hypotheses that have been put forward in three of the most importa
Data from: Modelling the consequence of glacier retreat on mixotrophic nanoflagellate bacterivory: a Bayesian approach
负责人:
关键词:
Bayes;JAGS;nanoflagellate;clearance rate;bacterivory
DOI:
doi:10.5061/dryad.wpzgmsbj1
摘要:
on Mixotrophic Nanoflagellate Bacterivory: A Bayesian Approach" which was accepted for publication in Oikos. The main contribution of this paper is a model
Data from: Effective online Bayesian phylogenetics via sequential Monte Carlo with guided proposals
负责人:
关键词:
phylogenetics;sequential Monte Carlo;Online Inference;Bayesian inference
DOI:
doi:10.5061/dryad.n7n85
摘要:
ful for dynamically unfolding evolutionary stories. This limitation can be addressed by applying a class of Bayesian statistical inference algorithms cal
Data from: The impact of variable degrees of freedom and scale parameters in Bayesian methods for genomic prediction in Chinese Simmental beef cattle
负责人:
Li, Junya
关键词:
Simmental BovineHD genotyping
DOI:
doi:10.5061/dryad.4qc06
摘要:
Three conventional Bayesian approaches (BayesA, BayesB and BayesCπ) have been demonstrated to be powerful in predicting genomic merit
Data from: Elevated substitution rate estimates from ancient DNA: model violation and bias of Bayesian methods
负责人:
关键词:
Demography;Bayesian;ancient DNA;mutation rate;coalescent simulation;heterochronous sequences
DOI:
doi:10.5061/dryad.1355
摘要:
t in the possibility of time dependency for molecular rate estimates. Here we provide a critical assessment of Bayesian MCMC analysis for the es

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