A method, an imaging apparatus and a computer readable medium are enabled for automatically registering medical images. The imaging apparatus may be an amended C-arm. The image acquisition apparatus has a primary x-ray source and at least one auxiliary x-ray source, a detector for receiving radiation of the primary and auxiliary x-ray source, and an interface to a registration unit. The registration unit computes a 3D/2D registration of a provided 3D image and at least two acquired 2D images. An output interface is configured to provide an output and to display the registered images on a monitor.