Disclosed herein are a method for quantitatively analyzing a molecular orbital distribution, and a quantitative analysis system of molecular orbital distributions using the same. The method comprise a) selecting two molecular orbitals to be compared for molecular orbital distributions and computing molecular orbital distributions by quantum chemistry calculation; b) calculating structural properties of each molecular orbital by means of an RDM (radially discrete mesh) calculation method, followed by matching with the molecular orbital distributions computed in step a) to obtain molecular orbital distributions according to the structural properties; and c) comparing the two molecular orbital distributions according to structural properties, obtained by RDM in step b), using a profiling method.