A magnetic navigation control apparatus includes a sensing unit, a control unit and a magnetic field generation unit. The sensing unit generates a sensing signal according to the position of a magnetic element. The control unit is electrically connected with the sensing unit and generates a first control signal and a second control signal according to the sensing signal. The magnetic field generation unit is electrically connected with the control unit and has a casing, plural interpoles and plural short poles. The interpoles are disposed at the casing. The short poles are disposed between the interpoles evenly. The magnetic field generation unit generates a navigation signal to control the magnetic element to move at least one direction of a predestined area according to the first control signal. The magnetic navigation control apparatus of the invention has better magnetic navigation effects, and can reduce the cost.一種磁導引控制裝置包括一感測單元、一控制單元以及一磁場產生單元。感測單元依據一磁性元件的位置產生一感測訊號。控制單元與感測單元電性連接,並依據感測訊號產生一第一控制訊號及一第二控制訊號。磁場產生單元與控制單元電性連接,並具有一殼體、複數個中間磁極及複數個短磁極,該等中間磁極設置於殼體,該等短磁極平均設置於中間磁極之間,磁場產生單元依據第一控制訊號產生一導引訊號,以控制磁性元件運動於一預定區域之至少一方向。本發明之磁導引控制裝置具有較佳的磁導引效果,並可降低成本。2...磁導引控制裝置21...感測單元22...控制單元23...磁場產生單元24...移動單元3...磁性元件G...導引訊號P...區域S...感測訊號S1...第一控制訊號S2...第二控制訊號