A system providing transitional bracket and transfer jig modules that have been custom designed to address a rotated or partially erupted tooth in advance of applying a computer aided bracketing system to the tooth. The transfer jigs and brackets are used until the problem tooth is moved into a position that will allow positioning of the “ideal” bracket. Once the ideal brackets are position, the treatment plan can proceed as it would with existing systems to reach the final ideal position. The transitional modules are integrated into the customized treatment plan such that the orthodontist just follows the digitized plan, including correction of misaligned teeth. The computer system that assists with defining the treatment plan takes into account the starting position of the teeth and can adjust the plan, as well as use of transitional brackets, to accommodate many more patients that have one or more problem teeth needing correction.
