An image pickup system includes an image pickup device (CIS) provided with a TG which generates a first reference synchronization signal and includes a synchronization signal self-generating counter, and a processor provided with a TG that generates a second reference synchronization signal and a reference synchronization signal comparing section that compares the first reference synchronization signal superimposed on a video signal with the second reference synchronization signal, in which when a shift occurs between the first reference synchronization signal and the second reference synchronization signal, the processor transmits the second reference synchronization signal or phase correction amount information to the CIS, and the TG changes a timing of the first reference synchronization signal according to the second reference synchronization signal or the phase correction amount information.
