A foodstuff and agent substance integration method and system are provided which may be used to integrate one or more agent substances and one or more foodstuffs together to form an agent permeated foodstuff in which the one or more agent substances and the one or more foodstuffs may not be separated by physical or mechanical methods. In some embodiments, the method may include the steps of: adding a foodstuff and one or more agent substances into an agitation device to form a combination consisting essentially of the foodstuff and agent substances agitating the combination of the foodstuff and agent substances within the agitation device for a period of time in the absence of any additives and integrating the foodstuff with the agent substances so that an agent permeated foodstuff is created consisting essentially of the foodstuff and the agent substances.