A fluid transportation system includes a fluid transportation device housing a flexible tube, a pump unit for ejecting a fluid by squeezing the tube, a communication section, and a battery, an ejection data processing device having an input device for inputting to the fluid transportation device a driving condition for ejecting a desired ejection amount of the fluid, a display section for displaying at least the driving condition, and a communication device for connecting the fluid transportation device and the ejection data processing device to each other, wherein the fluid transportation device is driven based on the driving condition input from the ejection data processing device.