Organization systems for surgical instruments input devices and associated methods and systems are disclosed herein. In one aspect, a surgical instrument input device organization system can include a first interface configured to receive input from a user and a second interface communicatively coupled to the first interface via a link. The second interface can include a module sized to receive a surgical input instrument device and an actuator configured to engage a movable surface of the surgical instrument input device in response to input received from the user at the first interface.
