The present invention relates to a method for manufacturing a chlorophyll-containing extract in which impurities are effectively removed from raw materials and a content of chlorophyll is high. The chlorophyll-containing extract manufactured by a complex supercritical fluid extraction process of the present invention can be directly applied to food or medicines without additional post-treatment by not being introduced with an organic solvent in a manufacturing process thereof.본 발명은 원료로부터 불순물이 효과적으로 제거되고 클로로필의 함량이 높은 클로로필 함유 추출물의 제조방법에 관한 것이다.