A medical manipulator system according to the present invention is provided with: a manipulator; a manipulator channel; a route that extends along the manipulator channel; a shape sensor that detects shape information of the manipulator channel; a shape-sensor driving portion that causes the shape sensor to be driven; a manipulator driving portion that causes the manipulator to be driven; a positional-information calculating portion that calculates positional information of the shape sensor on the basis of a driven amount of the shape-sensor driving portion; a shape estimating portion that estimates a bent shape of the manipulator on the basis of the shape information of the manipulator channel and the positional information; a control-parameter calculating portion that calculates a control parameter of the manipulator from the bent-shape information; and a manipulator controller that controls the manipulator on the basis of the control parameter.