Method for quantitative flow analysis of a tree of conduits perfusing an organ from at least two bi-dimensional images, the method comprising the following steps:a) making a 3D reconstruction of at least part of the tree from said at least two bi-dimensional images;b) identifying a segment of interest within the 3D reconstruction;c) making geometric calculations based on the 3D reconstruction;d) receiving from a user input on a model to be considered for the flow analysis and on the location of the segment of interest within such model;e) elaborating the model into a multi-scale functional model of the tree flow;f) scaling the part of the functional model related to the segment of interest using geometrical features of the 3D reconstruction;g) performing quantitative image analysis to correct the functional model to take into account of the status of at least parts of the conduits forming the tree;h) performing quantitative flow analysis based on the functional model so obtained.A corresponding apparatus and computer program are also disclosed.