The present invention relates to a container for transporting live fish, in which a protein skimmer is installed together with a fish tank in an interior of a cargo room of the container, bubbles discharged from the protein skimmer are stored in a large-capacity bubble tank, a water cooler having a refrigerating unit is installed in a container driver unit such that water discharged from the fish tank is cooled and resupplied to the fish tank, or water cooled by the water cooler can be brought into contact with the external air while the water is being injected into a dry filtering tank installed on the fish tank, and a filtering member impregnated with microorganisms that have been cultured therein is arranged in the dry filtering tank.