A whole cane sweet sorghum storage and handling system and method is described. The system and method places leaf-stripped whole cane stalks onto a storage pile which is ventilated to control conditions that prevent the deterioration of sugars in storage, which allows the production of sweet sorghum to ethanol after the harvesting season. The system and method comprises a crane system for transferring the oriented cane either from the transport wagons or dump pile to the storage pile and a long concrete pathway. The cane may be further cleaned of leaves, seed heads, dirt and foreign objects. Cane is deposited on a concrete slab on which airflow conduits have been laid with fans providing airflow. Thermocouples monitor pile conditions.