An analysis apparatus according to an embodiment includes processing circuitry. The processing circuitry performs registration between first ultrasound image data obtained at a first phase by an ultrasound diagnostic apparatus and first medical image data obtained by a medical image diagnostic apparatus other than the ultrasound diagnostic apparatus and performs registration between the first ultrasound image data and second ultrasound image data obtained at a second phase different from the first phase by the ultrasound diagnostic apparatus, to generate second medical image data registered with the second ultrasound image data; and combines the second ultrasound image data and the second medical image data to generate a single image, thereby performing registration between ultrasound image data by the ultrasound diagnostic apparatus and medical image data by the medical image diagnostic apparatus.