Data from: Origin and genome evolution of polyploid green toads in Central Asia: evidence from microsatellite markers

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关键词：

Bufo viridis subgroup microsatellites

DOI：

doi:10.5061/dryad.1jc02

摘要：

for the reticulate phylogeny in a species-rich radiation involving several closely related lineages and (ii) explore processes of genomic reorganization that ma

Data from: Diversification and asymmetrical gene flow across time and space: lineage sorting and hybridization in polytypic barking frogs

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关键词：

SNAPP;Eleutherodactylus;Craugastor tarahumaraensis;ABBA-BABA tests;phylogeography;RADseq;Craugastor uno;Craugastor augusti;species trees;Holocene;Pleistocene

DOI：

doi:10.5061/dryad.n420r

摘要：

us to identify two putative instances of reticulate gene flow. Partitioned D-statistics provided evidence that these events occurred in the same direction bet

Data from: Rapid allopolyploid radiation of moonwort ferns (Botrychium ; Ophioglossaceae) revealed by PacBio sequencing of homologous and homeologous

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关键词：

Ferns;PURC;reticulate evolution;polyploid network;Botrychium;Ophioglossaceae;low-copy makers;PacBio

DOI：

doi:10.5061/dryad.6q8d6

摘要：

Polyploidy is a major speciation process in vascular plants, and is postulated to be particularly important in shaping the diversity of extant ferns

Data from: Multilocus species trees show the recent adaptive radiation of the mimetic Heliconius butterflies

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关键词：

Multispecies coalescent;Podotricha;Neruda;Dryadula;Heliconius;Eueides;Pliocene;Dryas;Dione;Philaethria;Agraulis;Oligocene;Cethosia;mimicry;Lepidoptera;Incongruence;diversification rate;Miocene;Heliconiini;Cenozoic;Laparus;Pleistocene

DOI：

doi:10.5061/dryad.44b4j

摘要：

the heterogeneity across the data. Despite the large extent of reticulate signal and strong conflict between markers, nearly identical topologies are consiste

Data from: Assignment of homoeologues to parental genomes in allopolyploids for species tree inference, with an example from Fumaria (Papaveraceae)

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关键词：

coalescent stochasticity;incomplete lineage sorting;NRDP2;genome tree;substitution model error;allopolyploidy;coalescent simulation;homoeologues assignment;Fumaria;Papaveraceae

DOI：

doi:10.5061/dryad.7625d

摘要：

to the reconstruction of the reticulate phylogeny of the plant genus Fumaria (Papaveraceae) with ploidal levels ranging from 2x to 14x. We describe the challenges

Data from: New approaches to the biogeography and areas of endemism of red oaks (Quercus L., section Lobatae)

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关键词：

Lobatae;reticulate evolution;Mexico and Central America;neighbor-joining;Network analysis;complex areas;areas of endemism;red oaks

DOI：

doi:10.5061/dryad.nh30v

摘要：

to zones with low speciation rates and simple histories. In a classification scheme, NJ was capable of identifying the areas that are considered biotic

Data from: The effects of model choice and mitigating bias on the ribosomal tree of life

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关键词：

Trichoplax adhaerens;Cyanophora paradoxa;Desulfurispirillum indicum;Chlamydomonas reinhardtii;Bigelowiella natans;Cenarchaeum symbiosum;Cryptosporidium muris;Zymomonas mobilis;Nitrosoarchaeum limnia;Lactobacillus fermentum;Aspergillus flavus;Oscillibacter valericigenes;Arachnula sp;Archaeoglobus fulgidus;single-matrix model;Thermoplasma acidophilum;Paenibacillus sp;Perkinsus marinus;Corynebacterium pseudotuberculosis;Natromonas pharaonis;Staphylothermus marinus;two-domain tree;Diplonema sp;Prevotella denticola;Cyanothece sp;Ribosomal tree of life;Candida albicans;Anaerolinea thermophila;Methanocaldococcus jannaschii;Phaeodactylum tricornutum;Methylacidiphilum infernorum;Methanosarcina mazei;Dictyostelium discoideum;Chlorobium limicola;Thermotoga maritima;Methanosphaera stadtmanae;Babesia bovis;Thermodesulfatator indicus;Thermovibrio ammonificans;Flamella sp;Korarchaeum cryptofilum;Syntrophus aciditrophicus;Methanobrevibacter smithii;Deinococcus deserti;Gemmatimonas aurantiaca;Dyadobacter fermentans;Methanococcus aeolicus;Tribonema sp;Toxoplasma gondii;Acetobacter pasteurianus;Methanococcoides burtonii;Leishmania major;Thalassiosira pseudonana;Aeropyrum pernix;Nitrosomonas europaea;mixture model;Thermococcus kodakarensis;Arabidopsis thaliana;Apis mellifera;Nitrosopumilis sp;Halobacterium salinarum;Acidilobus saccharovorans;Pyrobaculum aerophilium;Fibrobacter succinogenes;Acanthamoeba sp;Idiomarina loihiensis;Ciona intestinalis;Meiothermus silvanus;Thermocrinis albus;Neisseria meningitidis;Spirochaeta coccoides;Methanopyrus kandleri;Xylella fastidiosa;Bodo sp;Ignicoccus hospitalis;Physarum polycephalum;Desulfurococcus mucosus;Danio rerio;Compositional heterogeneity;Treponema brennaborense;Sulfolobus solfataricus;Hypterthermus butylicus;Picrophilus torridus;Plasmodium vivax;Denitrovibrio acetiphilus;Haloarcula marismortui;three-domain tree;Metallosphaera sedula;Phytophthora infestans;Planctomyces brasiliensis;Thermovirga lienii;Trypanosoma brucei;Dictyoglomus thermophilum;Cryptobacterium curtum;Trimastix pyriformis;Cryptococcus gattii;Dehalococcoides ethenogenes;Pyrolobus fumarii;Guillardia theta;Methanoculleus marisingri;Thermus scotoductus;Syntrophothermus lipocalidus;Coraliomargarita akajimensis;Desulfobacca acetoxidans;Nitrosospira multiformis;Heterosigma sp;Prochlorococcus marinus;Fusobacterium nucleatum;Rhodopirellula baltica;Emiliana huxleyi;Nanoarchaeum equitans;Pyrococcus horikoshii;Ostreococcus tauri;Euglena sp

DOI：

doi:10.5061/dryad.7785h

摘要：

signal necessary for reconstructing a tree suitable as a backbone for life’s reticulate history. Here, we generate a ribosomal tree of life from a robust