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Data from: Inferring HIV-1 transmission networks and sources of epidemic spread in Africa with deep-sequence phylogenetic analysis
负责人:
关键词:
Transmission networks;HIV;Infectious disease epidemiology;2011-2015;phylogenetics;Deep-sequence phylogenetics;HIV prevention;Phylodynamics
DOI:
doi:10.5061/dryad.7h46hg2
摘要:
works, and infer the direction of transmission within them at an estimated error rate of 16.3% [8.8–28.3%]. With this error rate, deep-sequence phylogenetics cann
Data from: The evolution of sexual and parthenogenetic Warramaba: a window onto Plio-Pleistocene diversification processes in an arid biome
负责人:
关键词:
Evolution of Sex;insects;phylogeography;Warramaba;hybridization;speciation
DOI:
doi:10.5061/dryad.1405
摘要:
. All sexual lineages exhibited considerable phylogenetic structure. Detailed analyses of the hybrid parthenogenetic species W. virgo and its sexual
Data from: Tree imbalance causes a bias in phylogenetic estimation of evolutionary timescales using heterochronous sequences
负责人:
关键词:
Phylogenetic Theory and Methods;Evolutionary Theory;molecular evolution;Bioinfomatics\/Phyloinfomatics
DOI:
doi:10.5061/dryad.q4545
摘要:
observed in phylogenetic trees, can lead to reduced accuracy or precision of phylogenetic timescale estimates. We analysed simulated data
Data from: Death is on our side: paleontological data drastically modify phylogenetic hypotheses
负责人:
关键词:
Mammalia;morphology;Panarthropoda;parsimony;Squamata;Phyogeny;Echinoidea;Bayesian inference;Lemuriformes;fossils;Coccomorpha
DOI:
doi:10.5061/dryad.mp48001
摘要:
on empirical data matrices, we show that the inclusion of paleontological data has a remarkable effect in phylogenetic inference. Fossils often have higher levels
Data from: Information dropout patterns in restriction site associated DNA phylogenomics and a comparison with multilocus Sanger data in a spec
负责人:
关键词:
RAD phylogenomics;RAD-Sequencing;allelic dropout;SNP dropout;Geometridae;Locus dropout;Lepidoptera;Parsimony informative SNPs;molecular systematics;Eupithecia;ddRAD Sequencing;RAD sequencing
DOI:
doi:10.5061/dryad.474nd
摘要:
on multilocus Sanger sequencing, even less so using exactly the same species and specimens. We compared the Sanger-based phylogenetic hypothesis (8 loci; 6,172 bp
Data from: Some limitations of public sequence data for phylogenetic inference (in plants)
负责人:
关键词:
Streptophytina;Archaeplastida
DOI:
doi:10.5061/dryad.450qq
摘要:
to inference imposed by the structure of these data using theoretical foundations from phylogenetic data decisiveness. We find that despite very high levels
Data from: Current climate, but also long-term climate changes and human impacts, determine the geographic distribution of European mammal diversity
负责人:
关键词:
community structure;Functional traits;glaciations;global change;Human impact;phylogenetic diversity;species richness;structural equation models;trait diversity
DOI:
doi:10.5061/dryad.p2ngf1vnc
摘要:
climate is the primary driver of phylogenetic and trait diversity, while species richness is affected similarly by both current and past climates. Higher
Data from: Phylogenetically informed spatial planning is required to conserve the mammalian tree of life
负责人:
关键词:
Mammalia;conservation planning;Marxan;Mammals;phylogenetic diversity
DOI:
doi:10.5061/dryad.rc416
摘要:
when selecting areas to represent diversity across a phylogeny. It demonstrates the opportunity of using rapidly growing phylogenetic informati
Data from: Phylogenetic clustering of origination and extinction across the Late Ordovician mass extinction
负责人:
关键词:
Silurian;Devonian;Late Ordovician;brachiopod
DOI:
doi:10.5061/dryad.nf61t
摘要:
therefore promote both origination and extinction of closely related taxa. Here, we test whether there was phylogenetic selectivity in extincti

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