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Data from: Testing pipelines for genome-wide SNP calling from Genotyping-By-Sequencing (GBS) data for Pinus ponderosa
负责人:
关键词:
pipeline;reference-based;SNP;Pinus ponderosa;de novo;now;GBS
DOI:
doi:10.5061/dryad.6fv8fb4
摘要:
t genomes and their amenability to high-throughput genotyping techniques. Genotyping-by-sequencing (GBS) has been demonstrated to be a robust and cost
Data from: Ribosomal DNA sequence heterogeneity reflects intra-species phylogenies and predicts genome structure in two contrasting yeast species
负责人:
关键词:
whole genome sequencing;phylogenetic analysis;genome hybridisation;ribosomal DNA;concerted evolution;Yeast
DOI:
doi:10.5061/dryad.0674n
摘要:
nomic variation, both of which may be significant barriers to accurate phylogenetic inference. We recently analysed datasets from the Saccharomyces Genome Resequencin
Data from: Genotype-free estimation of allele frequencies reduces bias and improves demographic inference from RADSeq data
负责人:
关键词:
ANGSD;Ficedula hypoleuca;genotyping error;RADseq;demographic inference;allele frequencies
DOI:
doi:10.5061/dryad.1sd556t
摘要:
allele frequency estimation and demographic inference from whole genome sequencing data with that from RADSeq data matched for samples using both genotype-base
Data from: PSMC (pairwise sequentially Markovian coalescent) analysis of RAD (restriction site associated DNA) sequencing data
负责人:
关键词:
Pairwise Sequential Markovian Coalescent (PSMC);whole genome sequencing;threespine stickleback;demographic history;RAD sequencing
DOI:
doi:10.5061/dryad.0618v
摘要:
-genome sequence suggests a relatively recent expansion and decline within ca. 4000–40 000 generations ago, possibly reflecting postglacial expansion and founding
The Pig\u2019s other genome: a reference gene catalogue of the gut microbiome
负责人:
BGI
关键词:
missing Monoisolate
DOI:
doi:10.26036/cnphis0000044
摘要:
Pig is a main species for livestock and biomedicine. The pig genome sequence was recently reported. To boost research, we established a catalogue
Data from: Genomic evidence for convergent evolution of a key trait underlying divergence in island birds
负责人:
关键词:
Monarcha;divergence;Monarcha castaneiventris;Speciation with gene flow;convergent evolution;RAD sequencing;Parallel speciation
DOI:
doi:10.5061/dryad.4r0t0
摘要:
e used in conspecific recognition and likely important in reproductive isolation. Previous candidate gene sequencing identified point mutations in MC1R
Data from: Sex chromosome turnover contributes to genomic divergence between incipient stickleback species
负责人:
关键词:
chromosomal fusions;microarray;sex chromosome;QTL;Whole genome sequence;comparative genome hybridization;stickleback;Gasterosteus aculeatus;speciation
DOI:
doi:10.5061/dryad.40nk2
摘要:
ation on the neo-X chromosome, we conducted whole genome sequencing of males and females of both the Japan Sea and the Pacific Ocean species. No substantial
Data from: Lessons learned from microsatellite development for non-model organisms using 454 pyrosequencing
负责人:
关键词:
Comparative studies;shotgun sequencing;next generation sequencing technology;population genetics;massively parallel sequencing;conservation genetics
DOI:
doi:10.5061/dryad.22p7m
摘要:
was also with Next Generation Sequencing techniques more cost and time-consuming than for species with smaller genomes. In this study, we showed tha
Data from: Whole genome sequencing of elite rice cultivars as a comprehensive information resource for marker assisted selection
负责人:
关键词:
Rice Genomic variation High throughput sequencing Copy Number Variation Marker assisted selection
DOI:
doi:10.5061/dryad.8hg32
摘要:
Current advances in sequencing technologies and bioinformatics revealed the genomic background of rice, a staple food for the poor people
Data from: Phylogenomic analysis of BAC-end sequence libraries in Oryza (Poaceae)
负责人:
Cranston, Karen A.
关键词:
phylogenomics rice Oryza BAC-end sequencing missing data gene trees species trees
DOI:
doi:10.5061/dryad.1611
摘要:
of gene trees and detection of phylogenetic incongruence. Recent sequencing projects in Oryza sativa and its wild relatives have positioned rice

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