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Data from: Remarkably divergent regions punctuate the genome assembly of the Caenorhabditis elegans Hawaiian strain CB4856
负责人:
关键词:
Caenorhabditis elegans;Evolution;genome assembly;variation
DOI:
doi:10.5061/dryad.1k8kq
摘要:
to a reference genome when assessing differences between genomes.
Data from: De novo assembly and characterization of four anthozoan (phylum Cnidaria) transcriptomes
负责人:
关键词:
Fungia scutaria;database;Coral;Montastraea cavernosa;Anthopleura elegantissima;nonmodel system;phylogenomics;Seriatopora hystrix
DOI:
doi:10.5061/dryad.3f08f
摘要:
perate anemone (Anthopleura elegantissima). High-throughput sequencing of cDNA libraries produced ?20-30 million reads per sample, and de novo assembly of these
Data from: TERAD: Extraction of transposable element composition from RADseq data
负责人:
关键词:
Synalpheus;bioinformatics;mobile genetic element;genome size;ddRADseq
DOI:
doi:10.5061/dryad.2375033
摘要:
digest restriction-site associated DNA sequencing (ddRADseq) markers contain the same TE compositions as whole genome assemblies across arthropods. Ne
Data from: Assemblage Accumulation Curves: A framework for resolving species accumulation in biological communities using chloroplast genome sequences
负责人:
关键词:
Quaternary;Community Ecology;molecular dating;assemblage
DOI:
doi:10.5061/dryad.4rn1q84
摘要:
. Expected times to coalescence for multiple species in each community were inferred from pooled high?throughput sequence libraries. Local assemblage
Data from: Less is more: extreme genome complexity reduction with ddRAD using Ion Torrent semiconductor technology
负责人:
关键词:
Eurasian perch SNP development and validation de novo assembly next-generation sequencing population genomics DNA pooling
DOI:
doi:10.5061/dryad.s2405
摘要:
Massively parallel sequencing a small proportion of the whole genome at high coverage enables answering a wide range of questions from
Data from: Evolutionary history inferred from the de novo assembly of a non-model organism, the blue-eyed black lemur
负责人:
关键词:
conservation genetics;molecular evolution;Eulemur macaco;Mammals;Eulemur flavifrons;Ecological Genetics;Population Genetics - Empirical;Adaptation
DOI:
doi:10.5061/dryad.rn745
摘要:
of OCA2 explains most of the brown/blue eye colour differences. We built a de novo genome assembly for E. flavifrons, providing the most complete lem
Data from: Analysis of transposable elements in the genome of Asparagus officinalis from high coverage sequence data
负责人:
关键词:
DOI:
doi:10.5061/dryad.s71t4
摘要:
nt about 30% of asparagus genome. Overall, TEs masked about 53% of the A. officinalis assembly. Majority of the identified TEs belonged to LTR retrotransposons
Genomic data from the peregrine falcon (Falco peregrinus)
负责人:
关键词:
Genomic
DOI:
doi:10.5524/101006
摘要:
at 1.2 Gb, suggesting a genome coverage of 106.72×. SOAPdenovo was used for assembly and resulted in scaffold N50 and contig values of 3.89 Mb and 28.6 kb
Data from: Genomics of Compositae crops: reference transcriptome assemblies, and evidence of hybridization with wild relatives
负责人:
关键词:
Agriculture Transcriptomics Angiosperms Hybridization
DOI:
doi:10.5061/dryad.cp723
摘要:
e experienced various levels of domestication. Here we have used next generation sequencing technology to develop 15 reference transcriptome assembl
Data from: De novo assembly of a tadpole shrimp (Triops newberryi) transcriptome and preliminary differential gene expression analysis
负责人:
关键词:
Gene Regulation;RNA-sequencing;Crustaceans;Transcriptomics;local adaptation;Triops newberryi;Branchiopod
DOI:
doi:10.5061/dryad.t3j7m
摘要:
the assembly, and genes were sorted into gene ontology categories. The use of different water conditions allowed for a preliminary differential gene expression

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