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Fully Bayesian analysis of RNA-seq counts for the detection of gene expression heterosis
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Genetics Molecular Biology Biotechnology 69999 Biological Sciences not elsewhere classified 19999 Mathematical Sciences not elsewhere classified 110309 Infectious Diseases Plant Biology
DOI:
doi:10.6084/m9.figshare.6949499.v1
摘要:
and non-uniform distributions for p-values under these null hypotheses. Thus, we develop a general hierarchical model for count data and a fully Bayesian analysis in which
Data from: The evolutionary relationships and age of Homo naledi: an assessment using dated Bayesian phylogenetic methods
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关键词:
Dinaledi hominins;Bayesian phylogenetic analysis;genus Homo;Morphological clock;Homo naledi
DOI:
doi:10.5061/dryad.d7r4g
摘要:
ary tree?” and “How old is it?” We used a large supermatrix of craniodental characters for both early and late hominin species and Bayesian phylogenetic techniques
Data from: Bayesian total-evidence dating reveals the recent crown radiation of penguins
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关键词:
divergence times;MCMC;phylogenetics;birth-death process;calibration
DOI:
doi:10.5061/dryad.44pf8
摘要:
l occurrence dates. We incorporate the FBD model and a model of morphological trait evolution into a Bayesian total-evidence approach to dating species
Data from: Bayesian morphological clock methods resurrect placoderm monophyly and reveal rapid early evolution in jawed vertebrates
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关键词:
placoderms;Monophyly;morphology;tip dating;tree topology;Bayesian;phylogenetics;Morphological clock;BEAST
DOI:
doi:10.5061/dryad.v30f1
摘要:
with incorrect root positions. These simulations also show that Bayesian tip-dated clock methods outperform parsimony when the outgroup is largely uninformative
Data from: Bayesian hierarchical models for spatially misaligned data in R
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DOI:
doi:10.5061/dryad.3g9s2
摘要:
and illustrates a Bayesian regression framework for modelling spatially misaligned multivariate data. Particular attention is paid to developing valid
Data from: Causal reasoning in rats' behaviour systems
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关键词:
Bayesian networks;Rattus norvegicus;cognitive modelling;causal reasoning;behaviour systems;Causal Model Theory
DOI:
doi:10.5061/dryad.20h4r
摘要:
e assumptions, with formal help from Bayesian Networks, self-production of the Tone should reduce expectation of alternative causes, including Light, and thei
Data from: A hierarchical Bayesian approach for handling missing classification data
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关键词:
N-mixture model;elk;wildlife;Cervus elaphus nelsoni;Hierarchical Bayesian Statistics;abundance;Multi-State Mark-Recapture;population size
DOI:
doi:10.5061/dryad.8h36t01
摘要:
. We developed two hierarchical Bayesian models to overcome the assumption of perfect assignment to mutually exclusive categories in the multinomia
Data from: Detection of implausible phylogenetic inferences using posterior predictive assessment of model fit
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关键词:
Simulation;Markov chain Monte Carlo;Bayesian;phylogenetic;Posterior Predictive Distribution;Sequence Evolution;model fit
DOI:
doi:10.5061/dryad.nc866
摘要:
is a flexible and intuitive approach for assessing goodness-of-fit of the assumed model and priors in a Bayesian phylogenetic analysis. Here, I propose ne
Data from: Cladogenetic and anagenetic models of chromosome number evolution: a Bayesian model averaging approach
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关键词:
anagenetic;Dysploidy;polyploidy;Bayes factors;ChromoSSE;phylogenetic models;whole genome duplication;chromosome evolution;reversible-jump Markov chain Monte Carlo;chromosome speciation;cladogenetic
DOI:
doi:10.5061/dryad.46m4b
摘要:
timate the location and timing of possible chromosome speciation events over the phylogeny. We implemented ChromoSSE in a Bayesian statistical framework, spe
Data from: Occupancy models for data with false positive and false negative errors and heterogeneity across sites and surveys
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关键词:
informative prior;imperfect detection;occupancy model;scenario;observation;phantom species;Mniotilta varia;detection probability;confirmed detection;hierarchical Bayesian model;Monte Carlo simulation
DOI:
doi:10.5061/dryad.t68v8
摘要:
hierarchical Bayesian models that utilize a subset of data with either confirmed detections of a species’ presence (CP model) or both confirmed presences and confirmed absences

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