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Data from: Comparing the effectiveness of metagenomics and metabarcoding for diet analysis of a leaf-feeding monkey (Pygathrix nemaeus)
负责人:
关键词:
Environmental DNA;Pygathrix nemaeus;colobines;feces;shotgun sequencing
DOI:
doi:10.5061/dryad.99dj8
摘要:
ectively corresponded to chloroplast genomes. Sequences were matched against a database of available chloroplast ‘barcodes’ for angiosperms. The result
Data from: Extensive horizontal gene transfer, duplication, and loss of chlorophyll synthesis genes in the algae
负责人:
关键词:
DOI:
doi:10.5061/dryad.3ss6p
摘要:
genes, the LIPOR gene complement (chloroplast-encoded chlL, chlN, and chlB genes) is often absent. LIPOR genes have been lost from haptophytes and potentially fro
calophylla (Myrtaceae) in south-western Australia
负责人:
关键词:
gene flow;range expansion;Quaternary;Quaternary to Holocene;Corymbia calophylla (Lindl.) K.D. Hill & L.A.S. Johnson (Myrtaceae);persistence;climate oscillations;Evolution;phylogeography
DOI:
doi:10.5061/dryad.64n81
摘要:
ng genetic analyses of four slowly evolving non-coding chloroplast sequences and 16 nuclear microsatellites in the tree Corymbia calophylla fro
Data from: Insights into the origin and evolution of plant sigma factors
负责人:
关键词:
phylogenetic analysis;Chloroplast;gene duplication;Evolution;sigma factor
DOI:
doi:10.5061/dryad.n8065tv
摘要:
Plant sigma factors (SIGs) are key regulators of chloroplast gene expression and chloroplast differentiation. Despite their functional importa
Data from: Where did all the trees come from? A novel multispecies approach reveals the impacts of biogeographical history and functional diversity
负责人:
关键词:
refugia;chloroplast genome;Australian Rain Forest Species;single nucleotide polymorphisms;Next Generation Sequencing;Functional traits
DOI:
doi:10.5061/dryad.j64j0
摘要:
and functional factors shape the distribution of genetic diversity in rain forest trees. To achieve this, we explore chloroplast genomic diversity and divergence patterns
Data from: Recombination-dependent replication and gene conversion homogenize repeat sequences and diversify plastid genome structure
负责人:
关键词:
replication;chloroplast genome inverted repeats plastome ptDNA RDR recombination replication unit-genome;RDR;ptDNA;recombination;Chloroplast;Plastome;inverted repeats;Monsonia;unit-genome
DOI:
doi:10.5061/dryad.p34h3
摘要:
of plastid genomes (plastomes). The common phenomenon of small and large single copy inversion, hypothesized to occur through intramolecular recombination bet
Data from: Early photosynthetic eukaryotes inhabited low-salinity habitats
负责人:
关键词:
Cyanothece sp. PCC8801;Gloeomargarita lithophora;Volvox carteri nagariensis UTE2908;Fistulifera sp. JPCC DA0580;Pseudendoclonium akinetum;Pyramimonas parkeae;Precambrian;Anabaena cylindrica PCC7122;Photosynthetic eukaryotes;Cyanophora paradoxa;Prochlorococcus marinus str. MIT9515;Parachlorella kessleri;Synechococcus sp. WH8016;Synechococcus sp. PCC7002;Cyanidium caldarium;Cycas taitungensis;Pedinomonas minor;Chlamydomonas reinhardtii;Psilotum nudum;relaxed molecular clock.;Gloeobacter violaceus PCC7421;Prochloron didemni P2 Fiji;Anthoceros formosae;Mesoproterozoic;Thermosynechococcus elongatus BP1;Welwitschia mirabilis;Prasinoderma colonial;Pseudanabaena biceps PCC7429;Cyanothece sp. PCC7425;Angiopteris evecta;Cyanothece sp. PCC7424;Chlorokybus atmophyticus;Synechococcus sp. JA-3-3Ab;Coccomyxa sp. C169;Floydiella terrestris;Schizomeris leibleinii;Richelia intracellularis HH01;Microcystis aeruginosa NIES843 Micromonas sp. RCC299;Nodularia spumigena CCY9414;Porphyra purpurea;Adiantum capillus veneris;Buus microphylla;Calycanthus floridus;Nymphaea alba;Phaeodactylum tricornutum;Spinacia oleracea;Nodosilinea nodulosa PCC7104;Odontella sinensis;Chloroplast;Physcomitrella patens subsp patens;Great Oxidation Event;Aneura mirabilis;Cyanobacteria;Leptolyngbya sp. PCC7375;Synedra acus;Prochlorococcus marinus str. MIT9211;Cyanobium sp. PCC7001;Leptolyngbya sp. PCC7376;Verdigellas peltata;Bryopsis hypnoides;Gracilaria tenuistipitata;Synechococcus sp. RCC307;Ptilidium pulcherrimum;Prasinococcus sp. CCMP1194;Dunaliella salina;Nostoc azollae 0708;Ranunculus macranthus;Microcoleus vaginatus FGP2;Scenedesmus obliques;Synechococcus sp. PCC7335;Chaetosphaeridium globosum;Oscillatoria sp. PCC6506;Pseudanabaena sp. PCC7367;Raphidiopsis brookii D9;Richelia intracellularis HM01;Trichodesmium erythraeum IMS101;Prochloron didemni P3 Solomon;primary endosymbiotic event;Klebsormidium flaccidum;Acaryochloris marina MBIC11017;Arthrospira sp. PCC8005;Marchantia polymorpha;Staurastrum punctulatum;Coffea arabica;Porphyra yezoensis;Crocosphaera watsonii WH0003;Stigeoclonium helveticum;Pleurocapsa sp. PCC7327;Proterozoic;Gnetum parvifolium;Thalassiosira oceanica CCMP1005;Chara vulgaris;Leptosira terrestris;Cyanidioschyzon merolae strain 10D;Synechococcus sp. CB0101;Paulinella chromatophora;Nostoc punctiforme PCC73102;Pycnococcus provasolii;Illicium oligandrum;Prochlorococcus marinus str. AS9601;Nostoc sp. PCC7120;Fischerella sp. JSC11;Synechocystis sp. PCC6803;Cyanobium gracile PCC6307;Zygnema circumcarinatum;Microcoleus chthonoplastes PCC7420;Neoproterozoic;Pinus contorta;Calothrix sp. PCC6303;Ephedra equisetina;Synechococcus elongatus PCC6301;Amborella trichopoda;Cryptomeria japonica;Monomasti sp. OKE1;Pseudanabaena sp. PCC6802;phylogenomics;Lyngbya sp. PCC8106;Pre-Cambrian;Synechococcus sp. JA-2-3B'a(2-13);Oltmannsiellopsis viridis Oocystis solitaria SAG83 80;Syntrichia ruralis;Nephroselmis olivacea;Synechococcus sp. CC9605;Mesostigma viride;Ostreococcus tauri;Lyngbya majuscula 3L;Oedogonium cardiacum;Prochlorococcus marinus str. MIT9303;Cyanothece sp. CCY0110
DOI:
doi:10.5061/dryad.421p2
摘要:
The early evolutionary history of the chloroplast lineage remains an open question. It is widely accepted that the endosymbiosis that established
Data from: Testing for phylogenetic conflict among molecular data sets in the Tribe Triticeae (Gramineae)
负责人:
关键词:
Gramineae;Triticeae;Wilcoxon signed ranks test;permutation test;Poaceae;T-PTP test;phylogenetic congruence
DOI:
doi:10.5061/dryad.743
摘要:
cement of a single taxon. The chloroplast DNA restriction site data, however, support a significantly different tree, and the differences probably reflect a separate

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