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Data from: State-and-transition simulation models: a framework for forecasting landscape change
负责人:
关键词:
Markov chain;Modeling;stochastic;land use change;spatial;ST-Sim;landscape dynamics;Holocene;landscape ecology
DOI:
doi:10.5061/dryad.g58k0
摘要:
A wide range of spatially explicit simulation models have been developed to forecast landscape dynamics, including models for projecting change
Data from: Detecting evolutionarily significant units above the species level using the Generalized Mixed Yule Coalescent method
负责人:
关键词:
clade-dependent;rate shift;phylogenetic clustering;Birth-death;Simulation;diversification;clade-independent;relative extinction rate
DOI:
doi:10.5061/dryad.3rt26
摘要:
. 2. We simulated >32,000 trees under two clade-independent models: constant-rate birth-death (CRBD) and variable-rate birth-death (VRBD), using parameter esti
Data from: Bayesian methods outperform parsimony but at the expense of precision in the estimation of phylogeny from discrete morphological data
负责人:
关键词:
Likelihood;morphology;parsimony;Bayesian;phylogenetics
DOI:
doi:10.5061/dryad.10qf3
摘要:
accuracy, and implied-weights performs the most poorly. However, the Mk-model produces phylogenies that have less resolution than parsimony methods
Data from: Integrating continuous stocks and flows into state-and-transition simulation models of landscape change
负责人:
关键词:
Markov chain;ST-Sim software;Modeling;systems dynamics;carbon budget;stochastic;land use change;spatial;landscape dynamics;Holocene;landscape ecology
DOI:
doi:10.5061/dryad.6939c
摘要:
for continuous state variables, called a state-and-transition simulation model with stocks and flows (STSM-SF). The STSM-SF method allows for any numb
Data from: Equivalence between step selection functions and biased correlated random walks for statistical inference on animal movement
负责人:
关键词:
Animal movement biased walk models step selection functions Lagrangian methods maximum likelihood estimation
DOI:
doi:10.5061/dryad.217t3
摘要:
cond, we illustrated the link between the two approaches by fitting BCRW with maximum likelihood and with SSF to simulated movement data in virtual environments
Data from: Plant diversity in oceanic archipelagos: realistic patterns emulated by an agent?based computer simulation
负责人:
关键词:
archipelago configuration;agent-based simulation;Island Biogeography
DOI:
doi:10.5061/dryad.668ds1f
摘要:
te patterns of archipelagic species richness and composition and serve as a powerful additional method to complement empirical approaches.
Data from: ‘True’ null allele detection in microsatellite loci: a comparison of methods, assessment of difficulties, and survey of possi
负责人:
关键词:
microsatellite loci;NullAlleleGenerator;genetic diversity estimates;null allele detection;simulated null alleles;genotyping errors
DOI:
doi:10.5061/dryad.s571g
摘要:
individually or in combination. First, we introduced simulated ‘true’ null alleles into 240 population data sets and applied the methods to measure their success
Data from: QuLinePlus: extending plant breeding strategy and genetic model simulation to cross-pollinated populations – case studies
负责人:
关键词:
quantitative genetics;software;Simulation;cross-pollinated;plant breeding;genetic gain
DOI:
doi:10.5061/dryad.7368cc2
摘要:
s. Simulations are a strategic tool that enable the breeder to integrate the multiple components of a breeding program into a number of proposed scenarios that ar
Data from: Swapping birth and death: symmetries and transformations in phylodynamic models
负责人:
关键词:
Basel;maximum likelihood;phylogenetics;Bayesian inference;Phylodynamics;birth-death models;algebraic symmetries;speciation-extinction models
DOI:
doi:10.5061/dryad.57704ft
摘要:
cularly to maximum likelihood and Bayesian inference methods, as well as to model selection.
Data from: SimPhy: phylogenomic simulation of gene, locus and species trees
负责人:
关键词:
Multilocus Coalescent;Species tree;gene family evolution;Multispecies coalescent;incomplete lineage sorting;Simulation;substitution rate;Gene duplication and loss;gene conversion;Locus tree;Horizontal gene transfer
DOI:
doi:10.5061/dryad.707td
摘要:
to characterize the systematic overestimation of the duplication time when using standard reconciliation methods. SimPhy is available at https://github.com/adamallo

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