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Data from: Pan-genome and phylogeny of Bacillus cereus sensu lato
负责人:
关键词:
Bayesian model-based clustering;Bacillus cereus group;Bacillus cereus;Bacillus cereus sensu lato;Pan-genome;phylogenetic clustering;Bacillus;phylogenetics;Pan-GWAS;phylogeny
DOI:
doi:10.5061/dryad.dm82j
摘要:
based approach (Mash) was used to create reduced representations of selected Bacillus genomes, and a fast distance-based phylogenetic analysis
Data from: Allele phasing has minimal impact on phylogenetic reconstruction from targeted nuclear gene sequences in a case study of Artocarpus
负责人:
关键词:
Artocarpus;incomplete lineage sorting;Target Enrichment;phylogenetics;allele phasing;HybSeq;alleles
DOI:
doi:10.5061/dryad.r8q72
摘要:
heterozygous sequences do not contribute disproportionately to poor phylogenetic resolution and that the use of allele sequences for phylogeny reconstruction doe
Data from: Probabilistic graphical model representation in phylogenetics
负责人:
关键词:
tree plate;Inference;Statistical phylogenetics;Graphical Models;modularization;computation
DOI:
doi:10.5061/dryad.nt898
摘要:
of the subgraph corresponding to a phylogenetic tree. We describe a range of phylogenetic models using the graphical model framework and introduce modules
Data from: Phylogenomic analyses support traditional relationships within Cnidaria
负责人:
关键词:
phylogenetics phylogenomics transcriptomics
DOI:
doi:10.5061/dryad.4b6d3
摘要:
. How this diversity originated and evolved is not well understood because phylogenetic relationships among major cnidarian lineages are unclear, and recent studies pr
Data from: Genome-wide RAD sequence data provide unprecedented resolution of species boundaries and relationships in the Lake Victoria cic
负责人:
关键词:
cichlid;adaptive radiation;Cichlidae;RAD-seq;phylogenetics;Next Generation Sequencing
DOI:
doi:10.5061/dryad.6300n
摘要:
ciated DNA (RAD) markers to infer phylogenetic relationships among 16 species of cichlid fishes from a single rocky island community within Lake Vic
Data from: Testing and quantifying phylogenetic signals and homoplasy in morphometric data
负责人:
关键词:
Procrustes superposition;shape;Drosophila;phylogeny;squared-change parsimony;Geometric morphometrics;Homoplasy;Drosophilidae
DOI:
doi:10.5061/dryad.38gr5821
摘要:
The relationship between morphometrics and phylogenetic analysis has long been controversial. Here we propose an approach that is based on mapping
Data from: Multilocus phylogeny and revised classification for mountain dragons of the genus Japalura s.l. (Reptilia: Agamidae: Draconinae) from Asia
负责人:
关键词:
Agamidae;Diploderma;Draconinae;phylogenetics;taxonomy;Japalura;Cristidorsa;paraphyletic;Pseudocalotes
DOI:
doi:10.5061/dryad.683h4j5
摘要:
s not been revised, and phylogenetic relationships among the majority of congeners remain unknown. Here we utilize a densely sampled dataset of both multilocus genetic
Data from: Examining differences in phylogenetic composition enhances understanding of the phylogenetic structure of the shrub community in the northeastern Qinghai-Tibetan Plateau
负责人:
关键词:
Qinghai-Tibet Plateau;desert habitat;alpine habitat
DOI:
doi:10.5061/dryad.ngf1vhhr2
摘要:
-glacial period contributed to the recovery of species and phylogenetic diversity and the emergence of phylogenetic overdispersion. To test these hypotheses
Data from: Phylogenetic relationship among horseshoe crab species: effect of substitution models on phylogenetic analyses
负责人:
关键词:
RELL;Tachypleus gigas;substitution model;Tachypleus tridentatus;molecular phylogenetics;Carcinoscorpius rotundicauda;Limulus polyphemus
DOI:
doi:10.5061/dryad.551
摘要:
e morphological differentiation among horseshoe crab lineages has resulted in substantial controversy concerning the phylogenetic relationship among the extant species
Data from: A tale of two phylogenies: comparative analyses of ecological interactions
负责人:
关键词:
Ecology: evolutionary;Macroevolution;Community: structure;Evolution: host\/parasite;Ecology: statistical;Interactions: host\/parasite;phylogeny;Coevolution;statistics
DOI:
doi:10.5061/dryad.jf3tj
摘要:
kely to be shaped by the phylogenetic history of both parties. We develop generalized linear mixed-effects models (GLMM) that estimate the effect of both parti

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