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Data from: Reassessment of Homology of Morphological Characters in Tetractinellid Sponges Based on Molecular Data
负责人:
关键词:
Demospongiae;skeleton;Astrophorida;homology;ribosomal DNA;spicule;Tetractinellida;phylogeny;molecular systematics
DOI:
doi:10.5061/dryad.106
摘要:
mitochondrial DNA. We found that taxonomic congruence following conditional data combination, herein called compatible evidence (CE), resolved more nodes
Data from: An in silico comparison of protocols for dated phylogenomics
负责人:
关键词:
exon-capture;Primates;UCE;RADseq;phylogenomics
DOI:
doi:10.5061/dryad.8hs71
摘要:
dataset---that for uncontroversial nodes all data classes performed equally well, i.e. they recovered the same well supported topology. However, for one
Data from: Selecting question-specific genes to reduce incongruence in phylogenomics: a case study of jawed vertebrate backbone phylogeny
负责人:
关键词:
phylogenomic analysis;phylogenomic;Callorhinchus milii;systematic bias;phylogenetic signal;vertebrates
DOI:
doi:10.5061/dryad.47v40
摘要:
rd specific questions are not sufficient to produce consistent results when there are several difficult nodes within a phylogeny. Moreover, phylogenetic
Data from: Calculating structural complexity in phylogenies using ancestral ontologies
负责人:
关键词:
Phenotype;Recent;complexity;morphology;phylogeny;Araneae
DOI:
doi:10.5061/dryad.5f0h8
摘要:
approach, where the complexity scores are calculated only for terminals, and optimized as a continuous character on the internal nodes. These ideas ar
Data from: Phylogenomics uncovers confidence and conflict in the rapid radiation of Australo-Papuan rodents
负责人:
关键词:
Species tree;branch support;Coalescence;incomplete lineage sorting;Concatenation;exon capture;bootstrap;Murinae
DOI:
doi:10.5061/dryad.9sj4hm8
摘要:
s, we unequivocally resolve the majority of genus-level relationships within Hydromyini. However, at four nodes we recover inconsistency in branch support estimates bot
Data from: Predicting the ancestral character changes in a tree is typically easier than predicting the root state
负责人:
关键词:
Ancestral state prediction;phylogenetic tree;character evolution;Markov model
DOI:
doi:10.5061/dryad.sc724
摘要:
e of all internal nodes in the tree) may be easier or harder than reconstructing the ancestral root state. However, results from information theory indic
Data from: Multiple data sets, congruence, and hypothesis testing for the phylogeny of basal groups of the lizard genus Sceloporus (Squamata
负责人:
关键词:
character congruence;parsimony;Biogeography;maximum likelihood;phylogeny;weighted parsimony;Sceloporus
DOI:
doi:10.5061/dryad.604
摘要:
a hypothesis of transgulfian vicariance for the origin of the former genus "Sator" on islands in the Sea of Cortez. Robustness of support for internal nodes
Data from: Inferring node dates from tip dates in fossil Canidae: the importance of tree priors
负责人:
关键词:
Total Evidence Dating;Hesperocyoninae;Borophaginae;tip-dating;Canis;Canidae;BEASTmasteR;uniform tree prior;MrBayes;Cenozoic;Caninae
DOI:
doi:10.5061/dryad.vn52f
摘要:
v. 3.2.5. We find that for key nodes (Canis, approx. 3.2 Ma, Caninae approx. 11.7 Ma) a non-mechanistic model using a uniform tree prior produces estimates that ar
Data from: Markovian language model of the DNA and its information content
负责人:
关键词:
Symbolic dynamics;Correlation decay;mutual information rate and entropy rate;models;Markov partitions;network theory;chains;Information and ergodic theory;DNA linguistic model
DOI:
doi:10.5061/dryad.4gt8g
摘要:
of only tens of nodes, show how our model can be used to detect similar (or dissimilar) genes in different organisms, and which sequences of symbols ar
Data from: Phylogenetic signal and noise: predicting the power of a data set to resolve phylogeny
负责人:
关键词:
Site;noise;saturation;Rate;Informativeness;phylogeny;marker;information;polytomy;signal;parsimony;Locus;Power;Experimental design;resolution
DOI:
doi:10.5061/dryad.61cg073t
摘要:
A principal objective for phylogenetic experimental design is to predict the power of a dataset to resolve nodes in a phylogenetic tree. Howeve

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