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Data from: Terrace aware data structure for phylogenomic inference from supermatrices
负责人:
关键词:
phylogenetic terraces;Supermatrix;partition models;maximum likelihood;phylogenomic inference;partial terraces
DOI:
doi:10.5061/dryad.v02t3
摘要:
on models. Under such models each gene, or more generally partition, is allowed to evolve under its own evolutionary model. Though partition models provide
Data from: Beyond surrogacy: A multi-taxon approach to conservation biogeography
负责人:
关键词:
Complementarity Monmonier’s algorithm reserve selection spatially explicit species lists surrogate taxa
DOI:
doi:10.5061/dryad.pk27h
摘要:
ly, a wide variety of socioeconomic, political, demographic, geological, climatological, and evolutionary factors can be incorporated into the technique
Data from: Infectious disease dynamics inferred from genetic data via sequential Monte Carlo
负责人:
关键词:
sequential Monte Carlo;HIV;maximum likelihood;Virus evolution;Phylodynamics;iterated filtering
DOI:
doi:10.5061/dryad.3634m
摘要:
, Michigan. In a supplement, we prove that our approach is a valid sequential Monte Carlo algorithm. While we focus on how these methods may be applied
Data from: The interface of ecological novelty and behavioral context in the formation of ecological traps
负责人:
Robertson, Bruce
关键词:
evolutionary trap maladaptation light pollution aquatic insect behavioral reaction norm habitat selection
DOI:
doi:10.5061/dryad.2s5t6
摘要:
of species extinction, but our understanding of how evolved behavioral algorithms interface with increasingly novel ecosystems to trigger them remains limited. Bot
Data from: Use of hidden Markov capture-recapture models to estimate abundance in presence of uncertainty: application to estimating the preval
负责人:
Santostasi, Nina Luisa
关键词:
hidden Markov models capture-recapture hybridization Viterbi algorithm
DOI:
doi:10.5061/dryad.8g8r675
摘要:
mates of prevalence and assess the performance of our model under different sampling scenarios. We then illustrate our method with a real‐world case study of estimati
Data from: A radical shift in the taxonomy of Lepraria s.l.: molecular and morphological studies shed new light on the evolution of asexual
负责人:
关键词:
asexual reproduction;Modern;Lepraria;Speerschneidera;Evolutionary Placement Algorithm;Halecania;polyphyly;Nelsenium;Leprocaulon
DOI:
doi:10.5061/dryad.5j8b1
摘要:
A combination of molecular phylogenetic analyses of ITS and mtSSU sequences, morphological and chemical analyses were used to investi
Data from: Non-random latitudinal gradients in range size and niche breadth predicted by spatial patterns of climate
负责人:
关键词:
cellular automaton algorithm;Diversity patterns;latitudinal trends;120Ka to present;Rapoport\u2019s rule;fundamental niche;niche breadth;realized niche
DOI:
doi:10.5061/dryad.vd80g8n
摘要:
. Methods. We simulated latitudinal trends of niche breadth and range size for virtual species using a cellular automaton algorithm that linked a gridded
Data from: Fully automated sequence alignment methods are comparable to, and much faster than, traditional methods in large data sets: an examp
负责人:
关键词:
DOI:
doi:10.5061/dryad.nc220
摘要:
on of full genomes and genomic fragments), which can compound the computational issues related to MSA. Traditionally, alignments are produced with automated algorithms
Data from: Time-dependent speciation and extinction from phylogenies: a least squares approach
负责人:
关键词:
extinction;Agamidae;extinction;Birth-death;phylogeny;Catarrhinae;diversification;speciation;Birth-death;speciation
DOI:
doi:10.5061/dryad.7891
摘要:
nt several general algorithms of tree simulation in continuous time. I illustrate the application of this approach with the analysis of simulated data
Data from: A population genetics perspective on the evolutionary histories of three clonal, endemic, and dominant grass species
负责人:
关键词:
Orinus;Orinus intermedius;Population Biology;alpine grassland;AFLP;Genetic Variation;Orinus thoroldii;Poaceae;Orinus kokonoricus;present;hybridization;Orininae
DOI:
doi:10.5061/dryad.403j5s4
摘要:
We performed analyses of amplified fragment length polymorphism (AFLP) in order to characterize the evolutionary history of Orinus accordin

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