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Data from: Microevolutionary processes generate phylogenomic discordance at ancient divergences
- 负责人：
- DOI：
- doi:10.5061/dryad.88qf4
- 摘要：
- divergences. I used multispecies coalescent models to determine the impact of stochastic processes on deep phylogenomic histories. Here I show phylogenomic
Data from: Coalescent-based species tree inference from gene tree topologies under incomplete lineage sorting by maximum likelihood
- 负责人：
- DOI：
- doi:10.5061/dryad.240h7g8r
- 摘要：
- tree), which can complicate the inference of phylogenies. In this paper, I present a new coalescent-based algorithm for species tree inference
Data from: Testing classical species properties with contemporary data: how 'bad species' in the brassy ringlets (Erebia tyndarus complex
- 负责人：
- DOI：
- doi:10.5061/dryad.3n5c9
- 摘要：
- ormation for species delimitation. Current ease of access to genomic data and recent computational advances are blooming a plethora of coalescent-based species delimitation methods
Data from: HyDe: a Python package for genome-scale hybridization detection
- 负责人：
- DOI：
- doi:10.5061/dryad.372sq
- 摘要：
- of gene flow. The theory underlying the detection of hybridization using these site pattern probabilities exploits the relationship between the coalescent
Data from: Reticulate evolution within a spruce (Picea) species complex revealed by population genomic analysis
- 负责人：
- DOI：
- doi:10.5061/dryad.gb6c3b0
- 摘要：
- of the four taxa. Coalescent simulations, for each pair of taxa and for all taxa taken together, rejected several tree-like divergence models and supported instea
Data from: Phylogenomic analyses resolve an ancient trichotomy at the base of Ischyropsalidoidea (Arachnida, Opiliones) despite high levels of gene
- 负责人：
- DOI：
- doi:10.5061/dryad.3mr26
- 摘要：
- analytical approaches to explore this succession of ancient diversification events, including concatenated and coalescent-based analyses and maximum likelihood
Data from: Assignment of homoeologues to parental genomes in allopolyploids for species tree inference, with an example from Fumaria (Papaveraceae)
- 负责人：
- DOI：
- doi:10.5061/dryad.7625d
- 摘要：
- , such as substitution model error (failure of the model to account for the complexity of the data) and coalescent stochasticity (presence
Data from: Sky island diversification meets the multispecies coalescent – divergence in the spruce-fir moss spider (Microhexura montivaga, Araneae
- 负责人：
- DOI：
- doi:10.5061/dryad.r87k3
- 摘要：
- h within and among montane populations, with five to seven primary genetic lineages recovered. Multispecies coalescent validation analyses [guide tree and unguided
Data from: Worldwide phylogeny of three-spined sticklebacks
- 负责人：
- 关键词：
- Pleistocene to Holocene.;SNP;Gasterosteus;coalescent;RAD-seq;phylogenomics;Gasterosteus aculeatus
- DOI：
- doi:10.5061/dryad.2529hr1
- 摘要：
- ts of the species distribution range, we subjected thousands of single nucleotide polymorphisms to coalescent analyses in order to reconstruct a robust worldwide phylogeny
Data from: Modeling human population separation history using physically phased genomes
- 负责人：
- DOI：
- doi:10.5061/dryad.r7fs8
- 摘要：
- Coalescent (PSMC) and Multiple Sequentially Markovian Coalescent (MSMC) models. We find that statistically phased haplotypes yield a more recent split
